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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oat-Oat, KxO, 2003
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Maps 21+46_31+40
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO, 2003 [ View Map Set Info ]
Map Name: 21+46_31+40
Map Start: 0 cM
Map Stop: 118 cM
Features by Type:
15 AFLP
21 RFLP
36 Total

Map Features

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Items 1 to 25 of 36.       of 2 | Next
Oat - Oat, KxO, 2003 - 21+46_31+40
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Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cdo1407a RFLP 28.5 Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF139 QTL 2 - 5.6 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF133 QTL -0.6 - 2.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF134 QTL -0.6 - 2.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF138 QTL -0.6 - 5.6 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF137 QTL -0.6 - 2.8 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CDO1407 RFLP 13,299,763 - 13,299,946 (bp) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF136 QTL 2 - 5.6 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CDO1407 RFLP 13,298,564 - 13,299,024 (bp) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF135 QTL 2 - 5.6 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 Xcdo1407A RFLP 0 (cM) Marker Identity View Maps
bcd782a RFLP 28.7 Oat - Cornell Diploid 1995 - D BCD782 RFLP 34.6 (cM) Marker Identity View Maps
umn51c RFLP 1.69 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 3 UMN51 RFLP 5,873,323 - 5,873,732 (bp) Marker Identity View Maps
CDO541 RFLP 3.28 Barley - Barley consensus - 1995 - 4H CDO541 RFLP 9.7 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 1 Bin 1.03 Maize Bin 48.4 - 74 (cM) Maize bin marker View Maps
Barley - Tadmor/Er Apm RI RFLP/AFLP/SSR - 4H AQGZ030 QTL 84.4 - 89.4 (cM) qtl_marker View Maps
Maize - Bins - 1 Bin 1.03 Maize Bin 48.4 - 74 (bins) Maize bin marker View Maps
Barley - Tadmor/Er Apm RI RFLP/AFLP/SSR - 4H AQGZ029 QTL 84.4 - 89.4 (cM) qtl_marker View Maps
Barley - Tadmor/Er Apm RI RFLP/AFLP/SSR - 4H CDO541 RFLP 97.3 (cM) Marker Identity View Maps
Barley - Barley consensus 2 - 1996 - 4H CDO541 RFLP 61 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - F CDO541 RFLP 52.3 (cM) Marker Identity View Maps
Barley - Tadmor/Er Apm RI RFLP/AFLP/SSR - 4H AQGZ036 QTL 124.3 - 129.3 (cM) qtl_marker View Maps
Maize - IBM2 2008 Neighbors - 1 cdo541 Probed site 205.37 (cM) maizegdb_to_gramene View Maps
aco190rv RFLP 17.9 No other positions
cdo419d RFLP 21.5 Maize - Cornell Wilson 1999 - 9 CDO419B RFLP 98.9 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 5H CDO419B RFLP 66.8 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 9 cdo419b Probed site 409.9 (cM) maizegdb_to_gramene View Maps
Barley - Barley consensus 2 - 1996 - 3H CDO419B RFLP 72 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 1H CDO419A RFLP 63.8 (cM) Marker Identity View Maps
Maize - Bins - 3 Bin 3.04 Maize Bin 42.8 - 67.9 (bins) Maize bin marker View Maps
Barley - Barley consensus 2 - 1996 - 6H CDO419A RFLP 96 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 11 BE439269 EST 7,956,378 - 7,956,410 (bp) related_sequence View Maps
Maize - Bins - 9 Bin 9.05 Maize Bin 86.1 - 104.4 (bins) Maize bin marker View Maps
Maize - Maize Bins QTL 2005 - 3 Bin 3.04 Maize Bin 42.8 - 67.9 (cM) Maize bin marker View Maps
Maize - Maize Bins QTL 2005 - 9 Bin 9.05 Maize Bin 86.1 - 104.4 (cM) Maize bin marker View Maps
Maize - IBM2 2008 Neighbors - 3 cdo419a Probed site 288.76 (cM) maizegdb_to_gramene View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 11 CDO419 RFLP 7,956,378 - 7,956,410 (bp) Marker Identity View Maps
umn441b RFLP 29.2 No other positions
cdo1246a RFLP 66.7 Oat - Cornell Kan/Ogl QTL 1995 - 31 AQDF256 QTL 5.3 - 8.3 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 31 Xcdo1246A RFLP 6.7 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - F CDO1246 RFLP 32.3 (cM) Marker Identity View Maps
CDO189 RFLP 69 Oat - Cornell Kan/Ogl QTL 1995 - 31 Xcdo189 RFLP 19.5 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 1 Bin 1.03 Maize Bin 48.4 - 74 (cM) Maize bin marker View Maps
Maize - Cornell Wilson 1999 - 1 CDO189A RFLP 42.2 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 1 cdo189a Probed site 205.37 (cM) maizegdb_to_gramene View Maps
Maize - Cornell Wilson 1999 - 9 CDO189B RFLP 111.6 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 9 cdo189b Probed site 437.92 (cM) maizegdb_to_gramene View Maps
Maize - Bins - 1 Bin 1.03 Maize Bin 48.4 - 74 (bins) Maize bin marker View Maps
Maize - Bins - 9 Bin 9.05 Maize Bin 86.1 - 104.4 (bins) Maize bin marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 3 CDO189 RFLP 8,046,603 - 8,046,740 (bp) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 9 Bin 9.05 Maize Bin 86.1 - 104.4 (cM) Maize bin marker View Maps
bcd1230b RFLP 71.7 Oat - Cornell Kan/Ogl QTL 1995 - 31 AQDF256 QTL 5.3 - 8.3 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - F BCD1230 RFLP 44.5 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 31 Xbcd1230B RFLP 11.7 (cM) Marker Identity View Maps
bcd1897b RFLP 73.8 Oat - Cornell Kan/Ogl QTL 1995 - 5 AQDF305 QTL 58.2 - 60.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 5 AQDF314 QTL 45.5 - 60.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 5 Xbcd1897A RFLP 64.4 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 5 AQDF306 QTL 58.2 - 60.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 5 AQDF313 QTL 58.2 - 60.8 (cM) qtl_marker View Maps
aco127ri RFLP 76.8 No other positions
isu1958b RFLP 82.2 Oat - Cornell Kan/Ogl QTL 1995 - 31 Xisu1958B RFLP 0 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 31 AQDF256 QTL 5.3 - 8.3 (cM) qtl_marker View Maps
umn442b RFLP 83 No other positions
cdo1312a RFLP 83.6 Wheat - Synthetic/Opata RI RFLP/SSR QT - 4B Xcdo1312-4B RFLP 38.3 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 4D Xcdo1312a RFLP 82 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 4D Xcdo1312a RFLP 82 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 4D Xcdo1312-4D RFLP 84.1 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5A Xcdo1312-5A RFLP 122.1 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 4H CDO1312 RFLP 69.5 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 4D Xcdo1312b RFLP 149 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 3 CDO1312 RFLP 1,513,930 - 1,514,432 (bp) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 4D Xcdo1312-4D RFLP 84.1 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 4B Xcdo1312.1 RFLP 43 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 3 CDO1312 RFLP 1,515,443 - 1,515,922 (bp) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5A Xcdo1312-5A RFLP 122.1 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 5A Xcdo1312c RFLP 91 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 4B Xcdo1312.1 RFLP 43 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 4B Xcdo1312-4B RFLP 38.3 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5A Xcdo1312c RFLP 91 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 4D Xcdo1312b RFLP 149 (cM) Marker Identity View Maps
cdo1436a RFLP 109 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 CDO1436 RFLP 25,036,287 - 25,036,402 (bp) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 11 AQDF016 QTL -1.3 - 2.1 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 11 AQDF015 QTL 5.8 - 10.3 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - G CDO1436 RFLP 45.9 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 11 AQDF013 QTL 5.8 - 10.3 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 11 Xcdo1436C RFLP 6.7 (cM) Marker Identity View Maps
umn5254_2c RFLP 118 No other positions
cdo1469bdi RFLP 23 Oat - Cornell Diploid 1995 - E CDO1469 RFLP 57.9 (cM) Marker Identity View Maps
cdo586b RFLP 23.8 Maize - Maize Bins QTL 2005 - 1 Bin 1.03 Maize Bin 48.4 - 74 (cM) Maize bin marker View Maps
Maize - Cornell Wilson 1999 - 1 CDO586 RFLP 48.5 (cM) Marker Identity View Maps
Maize - Bins - 1 Bin 1.03 Maize Bin 48.4 - 74 (bins) Maize bin marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 3 CDO586 RFLP 9,218,952 - 9,219,033 (bp) Marker Identity View Maps
Barley - Barley consensus - 1995 - 4H CDO586 RFLP 3.7 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 1 cdo586 Probed site 247.37 (cM) maizegdb_to_gramene View Maps
Oat - Cornell Diploid 1995 - C CDO586 RFLP 40.1 (cM) Marker Identity View Maps
Barley - Barley consensus 2 - 1996 - 4H CDO586 RFLP 54.9 (cM) Marker Identity View Maps
BCD1764 RFLP 25.1 No other positions
BCD1250 RFLP 27.7 Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF139 QTL 2 - 5.6 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - F BCD1250 RFLP 55.3 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF133 QTL -0.6 - 2.8 (cM) qtl_marker View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 4B Xbcd1250-4B RFLP 17.3 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF134 QTL -0.6 - 2.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF138 QTL -0.6 - 5.6 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF137 QTL -0.6 - 2.8 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 Xbcd1250 RFLP 3.5 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF136 QTL 2 - 5.6 (cM) qtl_marker View Maps
Wheat - Composite 2004 - 4B Xbcd1250x RFLP 19 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 21 AQDF135 QTL 2 - 5.6 (cM) qtl_marker View Maps
Wheat - Cornell Synthetic/Opata 1995 - 4B Xbcd1250-4B RFLP 17.3 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 4B Xbcd1250x RFLP 19 (cM) Marker Identity View Maps
E32/M49 AFLP 37.7 No other positions
E32/M49 AFLP 28.4 No other positions
E32/M60 AFLP 28.5 No other positions
E33/M48 AFLP 113 No other positions