grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Klein 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG-10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
RFLP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sorghum - Klein 2004 [ View Map Set Info ]
Map Name: LG-10
Map Start: 0 cM
Map Stop: 148.4 cM
Features by Type:
258 AFLP
37 RFLP
8 SSR
303 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 303.       of 13 | Next
Sorghum - Klein 2004 - LG-10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
txa2720 AFLP 28 Sorghum - TAMU FPC 2004 - ctg682 txa2720 AFLP 7 - 42 (bands) Marker Identity View Maps
txa2510 AFLP 43.2 - 45.1 Sorghum - TAMU FPC 2004 - ctg2806 txa2510 AFLP 9 - 56 (bands) Marker Identity View Maps
txa4094 AFLP 68.1 - 72 Sorghum - TAMU FPC 2004 - ctg1220 txa4094 AFLP 21 - 48 (bands) Marker Identity View Maps
txp217 SSR 64.3 - 70 Sorghum - Mace 2009 - 10 txp217 SSR 57.4 - 58.6 (cM) Marker Identity View Maps
Sorghum - TAMU FPC 2004 - ctg2704 txp217(10) SSR 4 - 30 (bands) Marker Identity View Maps
txp270 SSR 68.1 - 72 Sorghum - TAMU FPC 2004 - ctg1742 txp270(10) SSR 18 - 36 (bands) Marker Identity View Maps
Sorghum - Mace 2009 - 10 txp270 SSR 55.5 - 56 (cM) Marker Identity View Maps
txa2319 AFLP 68.1 - 70 No other positions
txa2502 AFLP 68.1 - 70 No other positions
txa170 AFLP 70 - 72 Sorghum - TAMU FPC 2004 - ctg144 txa170 AFLP 38 - 93 (bands) Marker Identity View Maps
txa464 AFLP 70 - 72 No other positions
txa2559 AFLP 68.1 - 72 Sorghum - TAMU FPC 2004 - ctg469 txa2559 AFLP 13 - 60 (bands) Marker Identity View Maps
ISU128 RFLP 84.9 Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 3 ISU128 RFLP 18.25 (cM) Marker Identity View Maps
Sorghum - Paterson 2003 - I ISU128 RFLP 50.8 (cM) Marker Identity View Maps
txa2174 AFLP 110.7 - 111.1 Sorghum - TAMU FPC 2004 - ctg1760 txa2174 AFLP 26 - 46 (bands) Marker Identity View Maps
txa3601 AFLP 135.7 No other positions
ISU45 RFLP 139.7 Maize - Maize Bins QTL 2005 - 6 Bin 6.01 Maize Bin 22.8 - 34.7 (cM) Maize bin marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 6 ISU45 RFLP 114.5 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 10 AQHL039 QTL 90.9 - 132.4 (cM) qtl_marker View Maps
Maize - Bins - 5 Bin 5.03 Maize Bin 55 - 86.7 (bins) Maize bin marker View Maps
Maize - IBM2 2008 Neighbors - 5 isu45b Probed site 282 (cM) maizegdb_to_gramene View Maps
Maize - Bins - 6 Bin 6.01 Maize Bin 22.8 - 34.7 (bins) Maize bin marker View Maps
Maize - IBM 2002 - 5 isu45b RFLP 243.5 (cM) Marker Identity View Maps
Sorghum - Mace 2009 - 10 ISU45 RFLP 108.6 - 109.8 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 5 isu45b RFLP 121.3 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 10 ISU45 RFLP 124.4 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 10 AQHL042 QTL 102.6 - 132.4 (cM) qtl_marker View Maps
Maize - Maize Bins QTL 2005 - 5 Bin 5.03 Maize Bin 55 - 86.7 (cM) Maize bin marker View Maps
txs1078 RFLP 17.2 Sorghum - Mace 2009 - 10 txs1078 RFLP 11.9 (cM) Marker Identity View Maps
txa156 AFLP 72 Sorghum - TAMU FPC 2004 - ctg555 txa156 AFLP 71 - 128 (bands) Marker Identity View Maps
txa167 AFLP 70 - 72 No other positions
txa173 AFLP 70 - 72 No other positions
txa179 AFLP 41.4 - 43.2 No other positions
txa180 AFLP 43.2 - 45.1 No other positions
txa19 AFLP 70 - 72 No other positions
txa190 AFLP 68.1 - 72 No other positions
txa195 AFLP 70 - 72 No other positions
txa198 AFLP 68.1 - 70 No other positions
txa2003 AFLP 77.9 - 80.3 No other positions