About Populus trichocarpa
Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western North America. It is an economically important source of timber. Its rapid growth and compact genome size (~500 Mbp, n=18) has lead to its use as a model organism for tree species.
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Update your old Ensembl IDs
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analysis
Download alignments (EMF)
Variation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Regulation
What can I find? Microarray annotations.
More about regulation in Populus trichocarpa
More about the Ensembl Plants microarray annotation strategy
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene/Ensembl Genomes projects include:- The standard set of Gramene analyses detailed here.