Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history
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Gramene is produced in collaboration with Ensembl Plants

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Gene: TIR1 Os05g0150500

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Location

Chromosome 5: 2,892,746-2,898,971 reverse strand.

About this gene

This gene has 1 transcript (splice variant), 225 orthologues and 62 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Os05t0150500-01	2199	587aa	Os05t0150500-01	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0DKP3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Literature

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Showing the top 9 hits from Europe PubMed Central

PubMed ID	Title	Authors	Journal
38094025	Transcriptome analysis of Saposhnikovia divaricata and mining of bolting and flowering genes.	Zhang M, Wang W, Liu Q, Zang E, Wu L, Hu G, Li M.	Chin Herb Med 15 (4) 2023
31481839	Transcriptome analysis reveals the different compatibility between LAAA × AA and LAAA × LL in Lilium.	Yang Y, Zheng W, Xiao K, Wu L, Zeng J, Zhou S.	Breed Sci 69 (2) 2019
34811366	The main oxidative inactivation pathway of the plant hormone auxin.	Hayashi KI, Arai K, Aoi Y, Tanaka Y, Hira H, Guo R, Hu Y, Ge C, Zhao Y, Kasahara H, Fukui K.	Nat Commun 12 (1) 2021
28490318	Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii.	Yang F, Zhu G, Wang Z, Liu H, Xu Q, Huang D, Zhao C.	BMC Genomics 18 (1) 2017
30650550	Evolution of Disease Defense Genes and Their Regulators in Plants.	Zhang R, Zheng F, Wei S, Zhang S, Li G, Cao P, Zhao S.	Int J Mol Sci 20 (2) 2019
23071617	microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.).	Ferreira TH, Gentile A, Vilela RD, Costa GG, Dias LI, Endres L, Menossi M.	PLoS One 7 (10) 2012
25755657	MicroRNAs and drought responses in sugarcane.	Gentile A, Dias LI, Mattos RS, Ferreira TH, Menossi M.	Front Plant Sci 6 2015
23129215	Effects of drought on the microtranscriptome of field-grown sugarcane plants.	Gentile A, Ferreira TH, Mattos RS, Dias LI, Hoshino AA, Carneiro MS, Souza GM, Calsa T, Nogueira RM, Endres L, Menossi M.	Planta 237 (3) 2013
25056773	Homogalacturonan-modifying enzymes: structure, expression, and roles in plants.	Sénéchal F, Wattier C, Rustérucci C, Pelloux J.	J Exp Bot 65 (18) 2014

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