Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
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ID History
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Gramene is produced in collaboration with Ensembl Plants

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Gene: LHY AT1G01060

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Description

Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839341]

Gene Synonyms

LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY1, T25K16.6, T25K16_6

Location

Chromosome 1: 33,365-37,871 reverse strand.

About this gene

This gene has 8 transcripts (splice variants), 153 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
LHY-204	AT1G01060.7	2908	645aa	AT1G01060.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W761 Q6R0H1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
LHY-201	AT1G01060.6	2933	643aa	AT1G01060.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4HQH3	-	-
LHY-206	AT1G01060.2	2814	645aa	AT1G01060.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W761 Q6R0H1	-	-
LHY-208	AT1G01060.5	2722	643aa	AT1G01060.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4HQH3	-	-
LHY-203	AT1G01060.1	2708	645aa	AT1G01060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W761 Q6R0H1	-	-
LHY-205	AT1G01060.4	2641	644aa	AT1G01060.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W696 F4HQG9	-	-
LHY-202	AT1G01060.3	2517	645aa	AT1G01060.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W761 Q6R0H1	-	-
LHY-207	AT1G01060.8	2132	645aa	AT1G01060.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W761 Q6R0H1	-	-

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Pan-taxonomic Compara

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Genomic alignments (Not available)

Gene tree

Orthologues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data