Arabidopsis thaliana (TAIR10) ▼ 
Summary
Splice variantsTranscript comparisonGene allelesSequenceSecondary StructureGene familiesLiteraturePlant ComparaPan-taxonomic ComparaOntologiesPhenotypesGenetic VariationVariant tableVariant imageStructural variantsGene expressionPathwayRegulationExternal referencesSupporting evidenceID HistoryGene historyGramene Search.
Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817857]
ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1, T21L14.11, T21L14_11
Chromosome 2: 13,977,881-13,983,609 forward strand.
This gene has 2 transcripts (splice variants), 167 orthologues and 27 paralogues.
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Showing the top 50 hits from Europe PubMed Central
| PubMed ID | Title | Authors | Journal |
|---|---|---|---|
| 38074475 | Elucidating the Temporal Patterns of Gene Expression in the Inferred Regulatory Interactions of GmCOL1b in Glycine max. | Alcantara M, Iftikhar H, Dzheyranyan D, Kagan K, Abbasi P, Alamilla A, Ayala N, Baca T, Benoit V, Clausen N, Coto C, Guerrero C, Hernandez Catalan E, Hurtado S, Lopez A, Lopez J, Majarian N, Mesfin N, Mishegyan A, Mkrtchyan G, Ordonez A, Pachanyan A, Pelayo T, Rosas A, Rowsey K, Sharma E, Sharma S, Van Grinsven S, Hanzawa Y. | MicroPubl Biol 2023 2023 |
| 38620015 | B-Box transcription factor BBX28 requires CONSTITUTIVE PHOTOMORPHOGENESIS1 to induce shade-avoidance response in Arabidopsis thaliana. | Saura-Sánchez M, Gomez-Ocampo G, Pereyra ME, Barraza CE, Rossi AH, Córdoba JP, Botto JF. | Plant Physiol 2024 |
| 37956407 | Functional divergence of Arabidopsis REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 and 2 in repression of flowering. | Chen S, Podolec R, Arongaus AB, Fuchs C, Loubéry S, Demarsy E, Ulm R. | Plant Physiol 194 (3) 2024 |
| PPR815521 | HY5 and COP1 function antagonistically in the light-dependent regulation of nicotine biosynthesis in tobacco | Singh D, Dwivedi S, Singh N, Trivedi PK. | preprint (2024) |
| 36495441 | Dissecting the functions of COP1 in the UVR8 pathway with a COP1 variant in Arabidopsis. | Zhang Q, Lin L, Fang F, Cui B, Zhu C, Luo S, Yin R. | Plant J 113 (3) 2023 |
| 38635077 | Disrupting FKF1 homodimerization increases FT transcript levels in the evening by enhancing CO stabilization. | Cho SW, Lokhandwala J, Park JS, Kang HW, Choi M, Yang HQ, Imaizumi T, Zoltowski BD, Song YH. | Plant Cell Rep 43 (5) 2024 |
| 36513604 | MYB30 integrates light signals with antioxidant biosynthesis to regulate plant responses during postsubmergence recovery. | Xie LJ, Wang JH, Liu HS, Yuan LB, Tan YF, Tan WJ, Zhou Y, Chen QF, Qi H, Li JF, Chen YQ, Qiu RL, Chen MX, Xiao S. | New Phytol 237 (6) 2023 |
| 38285953 | Light controls mesophyll-specific post-transcriptional splicing of photoregulatory genes by AtPRMT5. | Yan Y, Luo H, Qin Y, Yan T, Jia J, Hou Y, Liu Z, Zhai J, Long Y, Deng X, Cao X. | Proc Natl Acad Sci U S A 121 (6) 2024 |
| PPR771523 | OsUVR8b, rather than OsUVR8a, plays a predominant role in rice UVR8-mediated UV-B response | Chen Y, Zhong Y, Leung DWM, Yan X, Ouyang M, Ye Y, Li S, Peng X, Liu E. | preprint (2023) |
| 38623072 | Transcriptional regulation of flavonol biosynthesis in plants. | Cao Y, Mei Y, Zhang R, Zhong Z, Yang X, Xu C, Chen K, Li X. | Hortic Res 11 (4) 2024 |
| PPR750657 | Cytosolic heme metabolism by alternative localization of heme oxygenase 1 in plant cells | Chen Y, Nishimura K, Tokizawa M, Yamamoto YY, Oka Y, Matsushita T, Hanada K, Shirai K, Mano S, Shimizu T, Masuda T. | preprint (2023) |
| 37511897 | ZmCOP1 Regulates Maize Mesocotyl Length and Plant Height through the Phytohormone Pathways. | Chen L, Li Q, Wang M, Xiao F, Li K, Yang R, Sun M, Zhang H, Guo J, Chen J, Jiao F. | Life (Basel) 13 (7) 2023 |
| 38344182 | Functional dissection of phytochrome A in plants. | Lei Y, Ma Q, Zhang Y, Li J, Ning X, Wang Y, Ge X, Zhao H, Lin H. | Front Plant Sci 15 2024 |
| 38275750 | Phytochrome-Interacting Proteins. | Kaeser G, Krauß N, Roughan C, Sauthof L, Scheerer P, Lamparter T. | Biomolecules 14 (1) 2023 |
| 37300540 | Two splice forms of OsbZIP1, a homolog of AtHY5, function to regulate skotomorphogenesis and photomorphogenesis in rice. | Bhatnagar A, Burman N, Sharma E, Tyagi A, Khurana P, Khurana JP. | Plant Physiol 193 (1) 2023 |
| 38396758 | Comprehensive Characterization of the C3HC4 RING Finger Gene Family in Potato (Solanum tuberosum L.): Insights into Their Involvement in Anthocyanin Biosynthesis. | Chen L, Li Y, Zhu J, Li Z, Wang W, Qi Z, Li D, Yao P, Bi Z, Sun C, Liu Y, Liu Z. | Int J Mol Sci 25 (4) 2024 |
| 38494249 | Unveiling the structure and interactions of SOG1, a NAC domain transcription factor: An in-silico perspective. | Mahapatra K. | J Genet Eng Biotechnol 22 (1) 2024 |
| 38267085 | Diurnal Rhythms in the Red Seaweed Gracilariopsis chorda are Characterized by Unique Regulatory Networks of Carbon Metabolism. | Lee J, Yang JH, Weber APM, Bhattacharya D, Kim WY, Yoon HS. | Mol Biol Evol 41 (2) 2024 |
| 38542480 | NO and H2S Contribute to Crop Resilience against Atmospheric Stressors. | Corpas FJ. | Int J Mol Sci 25 (6) 2024 |
| PPR767340 | Warm temperature and mild water stress cooperatively promote root elongation | Hayes S, Leong CK, Zhang W, Lamain M, Lamers J, de Zeeuw T, Verstappen F, Hiltbrunner A, Testerink C. | preprint (2023) |
| 37853112 | Light regulation of the biosynthesis of phenolics, terpenoids, and alkaloids in plants. | Liu Y, Singh SK, Pattanaik S, Wang H, Yuan L. | Commun Biol 6 (1) 2023 |
| 37887291 | Role of Phytochromes in Red Light-Regulated Alternative Splicing in Arabidopsis thaliana: Impactful but Not Indispensable. | Careno DA, Assaf CH, Eggermont EDC, Canelo M, Cerdán PD, Yanovsky MJ. | Cells 12 (20) 2023 |
| 38545394 | Phytochrome phosphorylation in plant light signaling. | Han YJ, Kim SH, Kim JI. | Front Plant Sci 15 2024 |
| 37810087 | Photobiotechnology for abiotic stress resilient crops: Recent advances and prospects. | Gururani MA. | Heliyon 9 (9) 2023 |
| 38540739 | Overexpression of S30 Ribosomal Protein Leads to Transcriptional and Metabolic Changes That Affect Plant Development and Responses to Stress. | Finkelshtein A, Khamesa-Israelov H, Chamovitz DA. | Biomolecules 14 (3) 2024 |
| 37569689 | Expression Profiling Reveals the Possible Involvement of the Ubiquitin-Proteasome Pathway in Abiotic Stress Regulation in Gracilariopsis lemaneiformis. | Qin F, Shui G, Li Z, Tu M, Zang X. | Int J Mol Sci 24 (15) 2023 |
| 37572104 | Cross-Species Metabolomic Analyses in the Brassicaceae Reveals Common Responses to Ultraviolet-B Exposure. | Jing Y, Watanabe M, Aarabi F, Fernie AR, Borghi M, Tohge T. | Plant Cell Physiol 64 (12) 2023 |
| 38519909 | Integrated transcriptome and metabolome analysis reveals anthocyanin biosynthesis mechanisms in pepper (Capsicum annuum L.) leaves under continuous blue light irradiation. | Zhou Y, Wu W, Sun Y, Shen Y, Mao L, Dai Y, Yang B, Liu Z. | BMC Plant Biol 24 (1) 2024 |
| 38396654 | Genome-Wide Identification of B-Box Gene Family and Candidate Light-Related Member Analysis of Tung Tree (Vernicia fordii). | Shi K, Zhao G, Li Z, Zhou J, Wu L, Tan X, Yuan J. | Int J Mol Sci 25 (4) 2024 |
| 38254983 | GIGANTEA Unveiled: Exploring Its Diverse Roles and Mechanisms. | Liu L, Xie Y, Yahaya BS, Wu F. | Genes (Basel) 15 (1) 2024 |
| 38475501 | Functional Characterization of the MsFKF1 Gene Reveals Its Dual Role in Regulating the Flowering Time and Plant Height in Medicago sativa L. | Jiang X, Zhang L, Li Y, Long R, Yang Q, Kang J. | Plants (Basel) 13 (5) 2024 |
| 37971938 | A proxitome-RNA-capture approach reveals that processing bodies repress coregulated hub genes. | Liu C, Mentzelopoulou A, Hatzianestis IH, Tzagkarakis E, Skaltsogiannis V, Ma X, Michalopoulou VA, Romero-Campero FJ, Romero-Losada AB, Sarris PF, Marhavy P, Bölter B, Kanterakis A, Gutierrez-Beltran E, Moschou PN. | Plant Cell 36 (3) 2024 |
| 37631208 | Light-Induced TaHY5-7A and TaBBX-3B Physically Interact to Promote PURPLE PERICARP-MYB 1 Expression in Purple-Grained Wheat. | Jiang Q, Jiang W, Hu N, Tang R, Dong Y, Wu H, Liu T, Guan L, Zhang H, Hou J, Chai G, Wang Z. | Plants (Basel) 12 (16) 2023 |
| 35920787 | The RNA helicase UAP56 and the E3 ubiquitin ligase COP1 coordinately regulate alternative splicing to repress photomorphogenesis in Arabidopsis. | Li Y, Du Y, Huai J, Jing Y, Lin R. | Plant Cell 34 (11) 2022 |
| 37723122 | Rose long noncoding RNA lncWD83 promotes flowering by modulating ubiquitination of the floral repressor RcMYC2L. | Yeqing C, Jun L, Weinan W, Chunguo F, Guozhen Y, Jingjing S, Jinyi L, Changquan W. | Plant Physiol 193 (4) 2023 |
| 34129248 | Long-term abscisic acid promotes golden2-like1 degradation through constitutive photomorphogenic 1 in a light intensity-dependent manner to suppress chloroplast development. | Lee J, Choi B, Yun A, Son N, Ahn G, Cha JY, Kim WY, Hwang I. | Plant Cell Environ 44 (9) 2021 |
| PPR754879 | Gibberellin Perception Sensors 1 and 2 reveal cellular GA dynamics articulated by COP1 and GA20ox1 that are necessary but not sufficient to pattern hypocotyl cell elongation | Griffiths J, Rizza A, Tang B, Frommer WB, Jones AM. | preprint (2023) |
| 37789264 | Genome-wide analysis of blueberry B-box family genes and identification of members activated by abiotic stress. | Liu X, Sun W, Ma B, Song Y, Guo Q, Zhou L, Wu K, Zhang X, Zhang C. | BMC Genomics 24 (1) 2023 |
| 36545005 | COP1 mutation causes low leaf temperature under various abiotic stresses in Arabidopsis thaliana. | Kim JY, Lee SJ, Min WK, Cha S, Song JT, Seo HS. | Plant Direct 6 (12) 2022 |
| 37514360 | The Role of Light Quality in Regulating Early Seedling Development. | Wei Y, Wang S, Yu D. | Plants (Basel) 12 (14) 2023 |
| 37960036 | Regulation of Flowering Time by Environmental Factors in Plants. | Lee Z, Kim S, Choi SJ, Joung E, Kwon M, Park HJ, Shim JS. | Plants (Basel) 12 (21) 2023 |
| 36993851 | Postharvest light-induced flavonoids accumulation in mango (Mangifera indica L.) peel is associated with the up-regulation of flavonoids-related and light signal pathway genes. | Zhu W, Wu H, Yang C, Shi B, Zheng B, Ma X, Zhou K, Qian M. | Front Plant Sci 14 2023 |
| 35166830 | CONSTITUTIVE PHOTOMORPHOGENIC 1 promotes seed germination by destabilizing RGA-LIKE 2 in Arabidopsis. | Lee BD, Yim Y, Cañibano E, Kim SH, García-León M, Rubio V, Fonseca S, Paek NC. | Plant Physiol 189 (3) 2022 |
| 38336824 | Phosphorylation of Arabidopsis UVR8 photoreceptor modulates protein interactions and responses to UV-B radiation. | Liu W, Giuriani G, Havlikova A, Li D, Lamont DJ, Neugart S, Velanis CN, Petersen J, Hoecker U, Christie JM, Jenkins GI. | Nat Commun 15 (1) 2024 |
| 38153952 | Oligosaccharide production and signaling correlate with delayed flowering in an Arabidopsis genotype grown and selected in high [CO2]. | Kinmonth-Schultz H, Walker SM, Bingol K, Hoyt DW, Kim YM, Markillie LM, Mitchell HD, Nicora CD, Taylor R, Ward JK. | PLoS One 18 (12) 2023 |
| 37685948 | Potential Role of Phytochromes A and B and Cryptochrome 1 in the Adaptation of Solanum lycopersicum to UV-B Radiation. | Abramova A, Vereshchagin M, Kulkov L, Kreslavski VD, Kuznetsov VV, Pashkovskiy P. | Int J Mol Sci 24 (17) 2023 |
| 38130488 | Genome-wide identification and expression analysis of WRKY gene family members in red clover (Trifolium pratense L.). | Yuan G, Zhang N, Zou Y, Hao Y, Pan J, Liu Y, Zhang W, Li B. | Front Plant Sci 14 2023 |
| 33037720 | Phytochrome A inhibits shade avoidance responses under strong shade through repressing the brassinosteroid pathway in Arabidopsis. | Song B, Zhao H, Dong K, Wang M, Wu S, Li S, Wang Y, Chen P, Jiang L, Tao Y. | Plant J 104 (6) 2020 |
| 37481743 | Environmental F actors coordinate circadian clock function and rhythm to regulate plant development. | Zhang Y, Ma Y, Zhang H, Xu J, Gao X, Zhang T, Liu X, Guo L, Zhao D. | Plant Signal Behav 18 (1) 2023 |
| 35833514 | COP1 controls salt stress tolerance by modulating sucrose content. | Kim JY, Lee SJ, Min WK, Cha S, Song JT, Seo HS. | Plant Signal Behav 17 (1) 2022 |
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