III. List of gene markers maintained in the Rice Genetic Stock Center, IRRI (Compiled by G. S. Khush)

III. List of gene markers maintained in the Rice Genetic Stock Center, IRRI_ (Compiled by G. S. Khush)

RGS Gene Symbol Linkage Group Character Genetic No. Background =============================================================================== 001 tri X triangular hull Indica (IR36) 002 ws, dl I, XI white stripe, droopy leaf Indica 003 ws, lg I, II white stripe, liguleless Indica 004 Cl I clustered spikelets Indica 005 Ps-1, Lh I, XI purple stigma-1, long hair Indica 006 gh-2 X gold hull-2 Indica 007 nl-1 VI+IX neck leaf-1 Indica 008 nl-1, bc-1 VI+IX, XI neck leaf-1, brittle culm-1 Indica 009 bc-1, gl-1 XI, XII brittle culm-1, glabrous-1 Indica 010 g IV long glume Indica 011 dp-2 VII depressed palea-2 Indica 012 pgl fgl linkage group pale green leaf Indica 013 fl fgl linkage group faded leaf Indica 014 la VIII lazy growth habit Indica 015 z-2 VIII zebra striped leaf-2 Indica 016 lg II liguleless Indica 017 eg III extra glume Indica 018 lax III lax panicle Indica 019 ch-1 XI chlorina leaves-1 Indica 020 dl XI droopy leaves Indica 021 v-l I virescent-1, whitish panicle Indica 022 bf brown furrow (IR36) 023 bc-3 X brittle culm-3 (not clear cut) Indica 024 ch-1, nl-1 X, VI+IX chlorina leaves-1, neck leaf-1 Indica 025 ch-1, gh-2 XI, X chlorina leaves-1, gold hull-2 Japonica 026 dt, wx VIII, I tillering dwarf, waxy Japonica 027 nl-1, spl-1 VI+IX, d-33 neck leaf-1, spotted leaf-1 Japonica 028 dl, dp-1, gl XI, I, XII droopy leaf, depressed palea-1, Japonica glabrous 029 lg, v-1 I, XI liguleless, virescent-1 Japonica 030 lg, gh-2 I, X liguleless, gold hull-2 Japonica 031 lax, z-1 VIII, VIII lax panicle, zebra stripe leaf-1 Japonica 032 d-1, ops VI+IX, VI+IX "diakoku" dwarf, open spikelet Japonica sterile 033 fl, I-Bf fgl linkage group, faded green leaf, inhibitor for Japonica VII brown furrow on hull 034 lg, z-2 I, VIII liguleless, zebra striped leaf-2 Japonica 035 lg, spl-5 I, IV liguleless, spotted leaf-5 Japonica 036 lg, dk-1 I, X liguleless, "kyudai" dwarf-1 Japonica 037 lg, spl-3 I, XI liguleless, spotted leaf-3 Japonica 038 bl-1, gh-3 X, X brown discoloration of leaves and Japonica glumes-1, gold hull-3 039 lg, fc I, XI liguleless, fine culm Japonica 040 dp-1, spl-4 I, I depressed palea-1, spotted leaf-4 Japonica 041 lg, nal-1 I, II liguleless, narrow leaf-1 Japonica 042 lg, d-1, nl-2 I, VI+IX, VI+IX liguleless, "daikoku" dwarf-1, Japonica neck leaf-2 043 lg, bc-3 I, X liguleless, brittle culm-3 Japonica 044 lg, rk-1 I, II liguleless, round kernel-1 Japonica 045 ch-l, rl-2 XI, II chlorina-1, rolled leaf-2 Japonica 046 bc-3, gh-3 X, X brittle culm-3, gold hull Japonica 047 lg, rk-2 I, fgl liguleless, round kernel-2 Japonica 048 bc-1 XI brittle culm-1 Japonica 049 pgl fgl linkage group pale green leaf Japonica 053 gh-2 X Balilla mutant no. 10 (gold hull Japonica mutant) 054 la VIII Balilla mutant no. 19 (lazy Japonica mutant) 055 la VIII Cesariot mutant no. 28 (lazy Japonica mutant) 061 gh-2 Cesariot mutant no. 13 (gold hull Japonica mutant) 067 spl-1 Arlesienne mutant no. 10 (spotted Japonica mutant) 070 tri X Americano mutant no. 8 Japonica (triangular hull) 071 d-18 III Americano mutant no. 9 (dwarf Japonica mutant) 073 la VIII Americano mutant no. 16 (lazy Japonica mutant) 077 bl Cigalon mutant no. 20 (black leaf Japonica spot) 078 wx, bf I glutinous, brown furrow Indica 079 Cl, Pr I, II clustered panicle, purple hull Indica 080 A, C III, I chromogen Indica 081 lg II liguleless (not clear cut) Indica 082 Pp, Pb, g III(V), II, IV purple pericarp, long glume Indica 083 wh II white hull Indica 084 ph, Bh II, II negative phenol reaction, black Indica hull 085 drp dripping wet (not clear cut) Indica 086 Pn III purple node Indica 087 Pn, Pau III, III purple node, purple auricle Indica 088 anl angled leaf Indica 089 g, gh-2 IV, X long glume, gold hull-2 Indica 090 Rd,(Rc) red pericarp Indica 091 gh-2, wx X, I gold hull-2, glutinous Indica 092 Ps+ purple sheath Indica 093 gh-2, gl X, VI+IX gold hull-2, glabrous Indica 094 la VIII lazy Indica 095 nl neck leaf Indica 096 bl brown leaf spot Indica 097 bc-1, Bh, Ph brittle culm, black hull, Indica 098 wx, sk X, III(V) glutinous, scented kernel Indica 099 ch-1, spl-1 XI, d-33 chlorina leaves-1, spotted leaf-1 Indica 100 nal-2, g VII, IV narrow leaf-2, long glume Indica 101 rl-1, ri III, VI+IX rolled leaf-1, verticillate Indica rachis 102 lhs(ops) VI+IX naked seed rice (rice-wheat Indica hybrid F4) 103 eui VI+IX elongated uppermost internode Indica 104 lhs VI+IX long hull sterile Indica 105 ju-22 auricleless Indica 106 d-1, A, C, lg VI+IX, III, II, I dwarf-1, chromogen, liguleless Japonica 107 dw, A, C, lg X, III, I, II dwarf, chromogen liguleless Japonica 108 tri, lg X, II triangular hull, liguleless Japonica 109 dp-2, lg VII, II depressed palea-2, liguleless Japonica 110 dl, d-6 XI, IV droopy leaf, dwarf-6 Japonica 111 d-18, dl III, XI dwarf-18, droopy leaf Japonica 112 AC, dl, spl-2 III, I, XI chromogen, droopy leaf, spotted Japonica leaf-2 113 ch-1, d-6 XI, IV chlorina leaves-1, dwarf-6 Japonica 114 Bp, ch-1 VII, XI bulrush-like panicle, chlorina Japonica leaves-1 115 Dn, ch-1 VII, XI dense panicle, chlorina leaves-1 Japonica 116 ch-1, lg XI, II chlorina leaves-1, liguleless Japonica 117 wx, lg I, II glutinous, liguleless Japonica 118 dl, wx XI, I droopy leaf, glutinous Japonica 119 nal-2, -3, sp VIII, VIII, VIII narrow leaf-2, -3, short panicle Japonica 120 d-2, lg II, II dwarf-2, liguleless Japonica 121 d-11, lg II, II dwarf-11, liguleless Japonica 122 d-1, bl-1 VI+IX, X dwarf-1, black leaf spot-1 Japonica 123 d-1, spl-1 VI+IX, d-33 dwarf-1, spotted leaf-1 Japonica 124 nl-1, rl-1 VI+IX, III neck leaf-1, rolled leaf-1 Japonica 125 Pr, Pn, sp II, III, VIII purple pericarp, purple node, Japonica short panicle 126 d-10, A, C, wxIII, III, I, I dwarf-10, chromogen, glutinous Japonica 127 dp-1, wx, ws I, I, I depressed palea-1, glutinous, Japonica white stripe 128 bl, tri XI, X black leaf spot, triangular hull Japonica 129 nl-1, ri VI+IX, VI+IX neck leaf-1, verticillate rachis Japonica 130 spl-2, g, lg X, IV, II spotted leaf-2, long glume, Japonica liguleless 131 v-1, wx XI, I virescent-1, glutinous Japonica 132 d-11, Pn II, III dwarf-11, purple node Japonica 133 dl, dp-1, Cl XI, I, I droopy leaf, depressed palea-1, Japonica clustered spikelets 134 d-10, eg III, III dwarf-10, extra glume Japonica 135 Bp, fl VII, fgl group bulrush-like panicle, faded leaf Japonica 136 Dn, dp-2 VII, VII dense panicle, depressed palea-2 Japonica 137 d-30 gh-2 X, X "waisei-shirasasa" dwarf, gold Japonica hull-2 138 d-32, lg X, II "kyudai" dwarf-4, liguleless Japonica 139 ch-4, lg I, II chlorina leaves-4, liguleless Japonica 140 spl-5, lg IV, II spotted leaf-5, liguleless Japonica 141 spl-7, wx, lg VI+IX, I, II spotted leaf-7, glutinous, Japonica liguleless 142 rfs, lg' XI, II rolled fine stripes, liguleless Japonica 143 la VIII lazy growth Japonica 144 la, sp, z-1, lVIII, VIII, lazy growth, short panicle, zebra Japonica VIII,II striped leaf-1, liguleless 145 v-2, spl-3 XI, XI virescent-2, spotted leaf-3 Japonica 146 dl, rfs XI, IV droopy leaf, rolled leaf fine Japonica stripes 147 la, sp, dt VIII, VIII, VIII lazy, short panicle, tillering Japonica dwarf 148 Dn, Bp, drp-2 VII, VII, VII dense panicle, bulrush-like Japonica panicle, dripping wet-2 149 d-6, g, spl-5,IV, IV, IV, IV dwarf-6, long glume, spotted leaf Japonica Rc -5, brown pericarp and seed coat 150 Dn, drp-1,dp-2VII, II, VII dense panicle, dripping wet- Japonica 1,depressed palea-2 151 lg, rk-1 II, II liguleless, round kernel-1 Japonica 152 bc-3, dk-1 II, X brittle culm-3, "kyudai" dwarf-1 Japonica 153 spl-6, lg III, II spotted leaf-6, liguleless Japonica 154 spl-6, lax lg III, I, II spotted leaf-6, lax panicle, Japonica liguleless 155 I-Bf, eg,spl-6V, I, III inhibitor for brown furrow, extra Japonica glume, leaf-6 156 bc-3, gh-3 X, X brittle culm-3, gold hull-3 Japonica 157 la, v-4 VIII, VIII lazy growth, virescent-4 Japonica 158 sp, Dk-3, lg VIII, VIII, II short panicle, dwarf "kyushu"-3, Japonica liguleless 159 fc, ch-3, lg XI, XI, II fine culm, chlorina leaves-3, Japonica liguleless 160 rk-2, lg fgl, II round kernel-2, liguleless Japonica 161 nl-1, gl VI, XII neck leaf-1, glabrous Japonica 162 nl-1, spl-7,riVI, VI+IX, VI+IX neck leaf-1, spotted leaf-7, Japonica verticillate rachis 163 spl-8, lg VI+IX, II spotted leaf-8, liguleless Japonica 164 rl-2, A, C, dlII, III, I, XI rolled leaf-2, chromogen, droopy Japonica leaf 165 d-18, fs-2 III, III dwarf-18, fine stripe-2 Japonica 166 lax, ch-5, A,CI, III, III, I lax panicle, chlorina leaves-5, Japonica chromogen 167 ch-5, A, C, lg chlorina-5, chromogen, liguleless Japonica 168 v-6, lg III, II virescent-6, liguleless Japonica 169 v-6, lax III, I virescent-6, lax panicle Japonica 170 ch-6, lax III, I chlorina leaves-6, lax panicle Japonica 171 eg, dk-6 I, III extra glume, dwarf-kyushu-6 Japonica 172 rl-2, dk-2 II, III rolled leaf-2, dwarf-kyushu-5 Japonica 173 I-Bf,ch-1,fc,vV, XI, XI, XI, XI inhibitor for brown furrow, Japonica -2,spl-3 chlorina leaves-1, fine culm, virescent-2, spotted leaf-3 174 dl, bc-1, ch-2XI, XI, XI droopy leaf, brittle culm-1 Japonica chlorina-2 175 dk-7, lg XI, II dwarf-kyushu-7, liguleless Japonica 176 ch-1, ch-3 fc XI, XI, XI chlorina leaves-1, chlorina Japonica leaves-3, fine culm 177 drp-4, lg dripping wet-4, liguleless Japonica 178 fc, v-7 fine culm, virescent-7 Japonica 179 fc, v-7 fine culm, virescent-7 Japonica 180 ch-1, fc, v-5 XI, XI, XI chlorina leaves-1, fine culm, Japonica viresecent-5 181 dl, dk-7 XI, XI droopy leaf, dwarf-kyushu-7 Japonica 182 bc-1, v-2,dk-7XI, XI, XI brittle culm-1, virescent-2, Japonica dwarf-kyushu-7 183 dp-1, spl-4, I, I, I, II depressed palea-1, spotted leaf- Japonica ws, lg 4, white stripe, liguleless 184 v-3, lg I, II virescent-3, liguleless Japonica 185 dl, dp-1, v-3 XI, I, I droopy leaf, depressed palea-1, Japonica virescent-3 186 wx, v-3 I, I glutinous, virescent-3 Japonica 187 gh-3, dk-4 X, X gold hull-3, dwarf kyushu-4 Japonica 188 sp, v-4 VIII, VIII short panicle, virescent-4 Japonica 189 ylm, rk-1 II, II yellow leaf margin, round kernel- Japonica 1 190 v-1, ch-1 XI, XI virescent-1, chlorina-1 Japonica 191 spl-5, rfs IV, IV spotted leaf-5, rolled fine Japonica stripe leaves 192 ch-1, v-3 XI, I chlorina leaves-1, virescent-3 Japonica 193 nl-1, spl-8 VI+IX, VI+IX neck leaf-1, spotted leaf-8 Japonica 194 fl, rk-2 fgl linkage group faded leaf, round kernel-2 Japonica 195 fl, rk-2, lg fgl linkage group, faded leaf, round kernel-2, Japonica II liguleless 196 la, v-4, z-2 VIII, VIII, VII lazy growth, virescent-4, zebra Japonica striped leaf-2 197 dl, bc-1,ch-2,XI, XI, XI, XI droopy leaf, brittle culm-1, Japonica fc chlorina-2, fine culm 198 dl, z-2 XI, VIII droopy leaf, zebra leaf stripe-2 Japonica 199 drp-3, lg XI, II dripping wet-3, liguleless Japonica 200 dl, drp-3 XI, XI droopy leaf, dripping wet-3 Japonica 201 rl-3 rolled leaf-3 Japonica 202 pgl fgl linkage group pale green leaf Japonica 203 st, z-l striped leaf, zebra striped leaf Japonica 204 pl, M(spl) XI, ? droopy leaf, spotted leaf mutant Japonica 205 z-3 XI zebra striped leaf-3 Japonica 206 ch-4, dp-1 I, I chlorina leaves-4, depressed Japonica palea-1 207 drp dripping wet Indica 208 gl, v-seg glabrous, virescent Indica 209 Lh(Hg) long hair(hairy glumes) Indica 210 ygl yellow green leaf Indica 211 C, A, P, V,Pr,I, III, II, ?, II, purple apiculus, virescent, Indica gl I purple hull, glabrous 212 wx, gh, gl, bl glutinous, gold hull, glabrous, Indica black leaf spot 214 d-31, nal II, ? dwarf-31, narrow leaf Indica 215 d-42, lg II, II dwarf-42, liguleless Indica 216 lax I nude panicle Indica 217 op open palea Japonica 218 shp sheathed panicle Indica 219 su, v-8 sugary, virescent-8 Japonica 220 bc, z-4 brittle culm, zebra stripes-4 Japonica 221 dp depressed palea Japonica 222 dp, sp ?, VIII depressed palea, short panicle Japonica 223 lg, la, dl, dBII, VIII, XI, d-33 liguleless, lazy growth habit, Japonica droopy leaf, "bonsai" dwarf 224 wp-1 white panicle-1 Indica 225 wp-2 white panicle-2 Indica 226 chl-1 chlorina-1 (misra) Indica 227 RNMS-1 male sterile empty endosperm Indica 228 dr-1 double rice-1 Indica 229 Ps-1 I purple stigma Japonica 230 dl XI midribless-1 Indica 231 dl XI midribless-2 Indica 232 dl XI midribless-3 Indica 233 la lazy growth Indica 234 la VIII lazy growth Indica 235 Hg XII hairy glumes Japonica 236 md-1, sd-1 XII, III multiple pistil-1, semi-dwarf-1 Indica 237 Cl I clustered spikelets Indica 238 lg II liguleless Indica 239 Av I white stripes (Fs type) Indica 244 z-2 zebra striped leaf-2 (Misra) Indica 249 cl-6 chlorina leaves-6 Indica 256 d-l VI+IX cigar dwarf (R-17) Indica 257 d-l VI+IX cigar dwarf (R-385) Indica 258 purple rice (Crossa 2) Indica 259 la lazy Indica 262 spl-1, sd-1 d-33, III spotted leaf-1, semi-dwarf-1 Indica 263 chl-1, sd-1 XI, III chlorina leaves-1 (misra), semi Indica dwarf-1 264 ygl, sd-1 ?, III yellow green leaf, semi-dwarf-1 Indica 265 shp, sd-1 sheathed panicle, semi-dwarf-1 Indica 266 mp-2, sd-1 IV(?), III multiple pistil-2, semi-dwarf-1 Indica 267 wp-1, v white panicle-1, virescent Indica seedling 268 lax, sd-1 III, III lax panicle, semi-dwarf-1 Indica 269 Pl, lg II, II purple leaf, liguleless Japonica 270 lg, spl-9 II, ? liguleless, spotted leaf-9 Japonica 271 bgl-1, d-1,opsVI+IX, VI+IX, ? bright green leaf, dwarf-1, open Japonica spikelet sterile 272 stl, v-7 XI, XI striped leaf, virescent-7 Japonica 283 nal narrow leaf Indica 284 Cl, gh, g I, X, IV clustered spikelets, gold hull, Indica long glumes 285 bc brittle culm Indica 286 bn brittle culm, brittle node Indica 288 Prp, g ?, IV Pirurutong purple pericarp, long Indica glumes 289 bc-2 brittle culm-2 Japonica 290 v-8, sd-1 VI+IX, III virescent-8, semi-dwarf-1 Indica 291 eui, sd-1 VI+IX, III elongated uppermost internode, Indica semi-dwarf 292 aul, sd-1 ?, III auricleless, semi-dwarf-1 Indica 293 bc-4, sd-1 ?, III brittle culm-4, semi-dwarf-1 Indica 294 eg multi-glumes Indica 295 gh-1, sd-1 VI+IX, III gold hull-1, semi-dwarf-1 Indica 296 bc-1, sd-1 XI, III brittle culm-1, semi-dwarf-1 Indica 297 bc-3, sd-1 X, III brittle culm-3, semi-dwarf-1 Indica 298 pl II purple rice (recessive) Indica 299 spl-2, lg,sd-1X, II, III spotted leaf-2, liguleless, semi- Indica dwarf-1 300 spl-3, sd-1 XI, III spotted leaf-3, semi-dwarf-1 Indica 301 spl-5, sd-1 IV, III spotted leaf-5, semi-dwarf-1 Indica 302 rfg, sd-1 IV, III rolled fine striped leaves, semi- Indica dwarf-1 303 rfs, sp-5,sd-1IV, IV, III rolled fine striped leaf, spotted Indica leaf-5, semi-dwarf-1 304 Pl II purple rice Indica 305 shp (?) sheathed panicle (Gamadi) Indica 306 eg III multiglumes Indica 307 la-1 VIII lazy growth Indica 330 mpi mimics Piricularia susceptibility Indica(?) 331 C, cl, wx, P, I, I, I, II, II, chromogen, clustered spikelets, Indica Pl, prp, pj, III, (IV,V), XII, glutinous, colored apiculus, Gh, An, Gl XII purple leaf, purple pericarp purple junctura, gold hull, awned, glabrous 332 Plm II purple leaf margin Indica 333 Sth, cr panicle enclosed by flag leaf Indica sheath at maturity, crumbly endosperm 334 Gm extremely long glumes Indica 335 C, P, Pr, lg, I, II, II, ?, III, chromogen, colored apiculus, Indica pn, gh, An,Gl,VI, XII, XII, IV, purple hull, liguleless, purple g, Pj, nl, v ?, IX, I node, gold hull, awned, glabrous, long glumes, purple junctura, neck leaf, virescent 336 Gl, Lg, la, XII, ?, VIII, VI, glabrous, liguleless, lazy, gold Indica Gh/gh, Prb ? hull brown pericarp 337 Pf, Au, Pn,Gl,?, XII, III, XII purple furrowson hull, awned, Indica purple node, glabrous 338 gf gold furrows on hall Indica 339 Rk round kernel Indica =============================================================================