During the development of Oryza glumaepatula (IRGC 105668) introgression
lines with O. sativa cv. Taichung 65 genetic background (Sobrizal
et al. 1999), we found plants with notched kernels (Fig. 1) segregated
in BC4F2 population. Notched kernels were wrinkled,
brownish and white-cored, and notched at the belly. The BC4F2
population have retained O. glumaepatula chromosomal segment on
chromosome 5, based on whole genome survey of candidate O. glumaepatula
introgression lines (Sobrizal et al. 1999).
To determine the chromosomal location of the gene for notched kernel,
RFLP analysis was conducted using the BC4F2 population.
Phenotype of each BC4F2 plant was determined by
observing BC4F3 seeds. Seeds were classified into
the following three phenotypes: normal, notched and segregating. Linkage
analysis between notched kernel and RFLP markers on chromosome 5 revealed
that notched kernel co-segregated with RFLP marker R1607 on the
long arm of chromosome 5 (Table 1). Six plants with notched kernel phenotype
were homozygous for O. glumaepatula allele at R1607, 24
plants with normal phenotype were homozygous for Taichung 65 allele, and
the other 29 plants with segregating phenotype were
heterozygous. These results indicate that a single recessive gene controlling
notched kernel was located on the long arm of chromosome 5 (Fig. 2).
So far, only one gene for notched kernel has been reported (Misro et
al. 1966, Pavithran 1977). Nk was linked with gl1 (glabrous
hull 1) on chromosome 5 with a recombination value of 23% (Misro et
al. 1966, Pavithran 1977) and gl1 mapped on the short arm of
chromosome 5 (Yoshimura et al. 2001) was far from the position
of the notched kernel gene identified in this study. Because of the difference
in dominance and map position on chromosome 5, Nk appeared to be
different from the gene identified in this study. Therefore, the gene
identified was designated as nk2. The gene nk2 was mapped
between RFLP markers G1103 and R521 on the long arm of chromosome
5, with map distances of 3.5 cM and 3.6 cM, respectively (Fig. 2).
This study was supported by Bio-oriented Technology Research Advancement
Institution (BRAIN), Japan.
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