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16. | Loci of rice sucrose synthase |
N. KISHIMOTO1, H. AKAGI2, T. SATOZAWA3,
M. SAKAMOTO4, T. FUJIMURA5, K. HIGO1 and
H. SHIMADA6 1)National Institute of Agrobiological Sciences, Tsukuba, 305-8602, Japan 2)Faculty of Bioresource Sciences, Akita Prefectural University, Shimoshinjo-Nakano, Akita, 010-0146 Japan 3)Life Science Laboratory, Mitsui Chemicals, Inc., Mobara, Chiba 297-0017, Japan 4)Institute Graduate School of Agricultural Science, Kyoto University, Sakyo, Kyoto, 606-8502 Japan 5)Institute of Agricultural and Forest Engineering, University of Tsukuba, Tsukuba, 305-8572 Japan 6)Department of Biological Science and Technology, Science University of Tokyo, Noda, 278-8510 Japan |
Sucrose synthase (SuSy) is a key enzyme which catalyzes the reversible
cleavage of phloem-transported sucrose. To obtain a SuSy cDNA for mapping,
we screened a rice cDNA library from cv. 'Nipponbare' using a PCR product
obtained on the basis of the coding region sequence of rice SuSy gene
1 (RSs1) (accession: X64770). A cDNA consisting of 2.4 kbp (clone
name: fss1)was isolated, whose 3'end was the polyA signal region. The
fss1 sequence is identical to the 2.4 kbp region of the RSs1 (Accession:mRNA
Z15028;2.6kbp, including the ORF). Two portions of fss1 were used as probes
for RFLP analysis:the 600bp fragment of the 5' end region of the clone
(probe A), and the 1.8 kbp fragment of the 3' region of the clone (probe
B). RFLP analysis in this study was carried out according to the method
of Saito et al. (1991). The autoradiogram with probe A showed that
the HindIII-digested DNAs produced polymorphic major bands with
sizes of 2.9 kbp in 'Kasalath' lane and 2.6 kbp in 'FL134' lane, with
a monomorphic minor band (3.2 kbp) in each lane. The HindIIIdigested
DNAs of the F2 plants were used for the F2 analysis
using probe A. The segregation ratio was as follows: 'Kasalath' homozygotes
: heterozygotes : 'FL134' homozygotes = 35 : 75 : 25 (chi2
= 3.15, P>0.05). This locus was located between XNpb165-1 and XNpb200,
on chromosome 6 (tentative locus name: XcrSsA, Fig. 1). The autoradiogram
with probe B showed that the EcoRV-digested DNAs produced several
monomorphic bands in both parental lanes and the only null allelic band
with size of 11 kbp in 'Kasalath' lane. The EcoRV- digested DNAs
of the F2 plants were used for the F2 analysis using
probe B. The segregation ratio was as follows: 'Kasalath' homozygotes
and heterozygotes : 'FL134' homozygotes = 103 : 37 (chi2 =
0.15, P>0.05). This locus was located between XNpb117 and XNpb379,
on chromosome 7 (tentative locus name: XcrSsB, Fig. 1). We estimated
the copy number of sequence homologous to RSs1 to be 3 copies per
genome on the basis of the autoradiograms mentioned above, supporting
the result by Huang et al. (1996), who isolated 3 SuSy genes. To
confirm that these two SuSy loci represent two of the 3 rice SuSy loci,
we compared the previously-reported map positions for SuSy loci among
Poaceae crops. We confirmed that XcrSsA on chromosome 6 was the
RSs1 locus, which was identical to R1966, previously-mapped
locus by the Rice Genome Research Program (http://rgp.dna.affrc.go.jp/publicdata/geneticmap2000/chr06.html),
and that XcrSsB on chromosome 7 should be RSs3, the rice
locus orthologous to wheat XSs2 and barley XSs2 (Fig. 1).
These orthologus relations were supported by the comparison data of DNA
sequences and deduced amino acid sequence for SuSy genes of Poaceae crops.
So far we have not found a sequence perfectly matched with the DNA sequcence
of RSs3 (Accession:L03366) by BLASTN "Choose databes = nr", except L03366 itself. On the other hand, our result
by BLASTN "Choose database = nr" using the RSs2 sequence (the
gene: accession X59046) showed that the RSs2 sequence was perfectly
matched with a part of the sequence in a genomic clone from rice chromosome
3 (Accession: AC084380). |
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