1. Genes for coloration


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Gene   Character               Linkage* Chro-  Strain           Reference
symbol                          group   mosome  (Institution)
==============================================================================
AS     Anthocyanin activator      III    3   I-33                66,157,172,
       (purple apiculus in                   Surjamukhi(HK)      248,276,280
AE     the complementary                     E 44
       action with C and P,                  Pirurutong(HK)
A      multiple alleles)                     A-58 Kokushokuto-
                                         2
Dd                                           A-83 Norin-
                                             20go(HK)
Am                                           A-43 Hokkaimochi-
                                             Igo(HK)
A+                      
=============================================================================
Bf     Brown furrows of hull                 Most of japonica    68.172,231
I-Bf   Inhibitor for brown        V      1   A-5 Akamuro(HK)
       furrows                                 
==============================================================================
Bh-a   Black hull                            H-478 tester(HK)    109,144,
Bh-b   (complementary genes)                 H-478 do. CHK)      151,170
Bh-                               II     11  H-478 do. (HK)
c(Ph?)                    
==============================================================================
CBs    Chromogen for antho-       I      6   I-33                67,157,172,
       cyanin (Tawny color                   Surjamukhi(HK)      248,276,280
CB     apiculus in the comple-               A-13 Chabo(HK)
CBp    mentary action with P                 A-1 Akage(HK)
CBt    and purple apiculus                   A-103 Tanpaku(HK)
CBr    with A and P, multiple                A-5 Akamuro(HK)
CBd    alleles)                              I-47
                                             Dalashaita(HK)
CBk                                          I-33 Karalath(HK)
CBc                                          I-45 Charnock(HK)
CBm                                          A-43 Hokkaimochi-
                                             lgo(HK)
C+=C                      
Bm                      
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gf     gold furrows of hull       I      6                       90
gh-1   gold hull and inter-       VI+IX  2   H-75                88,170,172
       node-1                     (VI)       Okasshoku(HK)
gh-2   gold hull and inter-       X      8   HO-55O Miyazaki     67,73
       node-2                                No.3 (KY)
gh-3   gold hull and inter-       X      8   M-93 Norin-8        71
       node-3                                mutant(KY)
==============================================================================
P      Colored apiculus           II     11  I-32 Karalath(HK)   157,172,248,
Pk     (purple apiculus                      I-45                276,280
       in the complementary                  Charanock(HK)
PC     action with C and A,                  A-58 Kokushokuto-
       multiple alleles)                     2(HK)
P+                                           H-61
                                             Fusenshiro(HK)
Pa          Purple apiculus         (III)          indica type         20,154,
                                                                       216
Pau         Purple auricle          (III)          do.                 20,23,
                                                                       25,26,
                                                                       154
Pc          Purple coleoptile       (III)          do.                 20,22,
                                                                       26,I54
Pg          Purple glume            (II,           do.                 20,21.
                                                                       23
                                    III,IV
                                    V,IX)                              24,154
Pin-1       Purple internode-1      II         11  I-33                154,280,
                                                   Surjamukhi(HK)      335
                                    (III,IV)       indica type
pj          Purple junctura         (IV,V)         do.                 22,23,
                                                                       25,26,
                                                                       154
pjb         Purple junctura back    (X)            do.                 154,334
==============================================================================
pl          Purple leaf             II         11  A-77 Shito(HK),     21,67,
                                                                       172
                                                   HO-725,729          178,
                                                                       276,280
                                                   Shito(KY)
plw         Purple leaf and                        H-120(HK)           174,
            pericarp                                                   178,286
Pli(Pl')    Pure leaf                              I-102               111,280
                                                   Fully purple(HK) 
==============================================================================
I-pl-1      Inhibitor for           VI+IX      2   H-97(HK)            172,
                                                                       174,
                                                                       276,280
I-pl-2      purple leaf
I-pl-3      triplicate genes)       I              E-44 
                                                   Pirurutong(HK)
==============================================================================
I-pl-4      Inhibitor for           I          6   H-190(HK)           280,
                                                                       282
I-pl-5      purple pericarp
            (duplicate genes                       do.
==============================================================================
I-pl-6      Inhibitor for                          Most of japonica    111,
            purple leaf(PIi)                                           280
Pla         Purple leaf a           (IV)           indica type         154,
                                                                       155
Plg         Purple ligule           (II)           do.                 21,23,
                                                                       26,154
Plm(Pla)    Purple leaf margin      (II)           do.                 21,154
Pm(Sp)      Purple spetum           (III)          do.                 20,261,
                                                                       154
Pmr(Plm)    Purple midrib           (II)           do.                 2l,154
Pn          Purple node             III        3   A-58                23,66,
                                                                       172,
                                                                       276,280
                                                   Kokushokuto-2(HK),
                                                   HO-850 Kokuto(KY)
Pnr         Purple nodal ring                      indica type         23
Pr          Purple hull             II         11  A-13 Chabo(HK)      23,160,
                                                                       276,280
                                                   HO-850 Kokuto (KY)
==============================================================================
Prp-a(Pp)   Purple pericarp         III        3   M-514 Hun-nou       54,154
            (complementary genes)   (V)
Prp-b(Pb)                           II         11
==============================================================================
Ps-1        Purple stigmal          V              E-39                24,154,
                                                                       216,
                                                                       231,
                                    (III,          Gaisetimochi(HK)    277,280
                                    IV,IX)
Ps-2        Purple stigma-2         II         11  Taichung 65, A-S8   50,51
                                                   Kokushokuto-2(HK)
Ps-3        Purple stigma-3         II         11                      50,51
==============================================================================
I-Ps-a      Inhibitor for purple    (VII)          Taichung 65,        51
                                                   H-59(HK)
I-Ps-b      stigma (complementary   III        3
            genes)
=============================================================================
Psh         Purplleaf sheath        (II,           indica type         20,26,
                                    III,V)                             97,154
Pu          Purple pulvinus         (III)          do.                 25,154
Px          Purple leaf axil        (II,III)       do.                 25,26,
                                                                       154
==============================================================================
Rc          Brown pericarp          IV         10  A-5                 109,
            and seed coat                          Akamuro(HK)         172,189
Rcs                                                I-33                109,289
                                                   Surjamukhi(HK)
==============================================================================
Rd          Red pericarp            III        3   A-5                 109,172
            and seed coat
            (complementary
            action with Rc)
==============================================================================
Wh          White hull              II         11  L-11                88,172
                                                   White hull(HK)
==============================================================================