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Oryza sativa QTL "AQFA023" (grain core area white)
| QTL Accession ID | AQFA023 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | GRCARWHT |
| Trait Name | grain core area white |
| Published Symbol | wca3.1 |
| Trait Synonym(s) | WCA |
| Trait Category | Quality |
| Chromosome | 3 |
| Comments | The increased effect of this QTL was associated with the 'O. glaberrima' allele. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 35,835,805-35,836,096 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell V20A/glab QTL 2004 | BNL6.32 | 3 | 142.3-142.3 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFA023 | 3 | 142.3 | 142.3 |
Associated Markers (2)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM148 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | CDO87 | RFLP | Avena sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000665) | Li-J et al., 2004 (IAGP) |
| Plant Structure | (PO:0009001) | Li-J et al., 2004 (SM) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Li-J et al., 2004 (SM) |
| Growth Stage | (GRO:0007045) | Li-J et al., 2004 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-J et al., 2004 (SM) |
Database Cross-References (1)
SNPs (4)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 35,835,805 | 35,836,096 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
| chr3 | 35,835,805 | 35,836,096 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 35,835,805 | 35,836,096 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr3 | 35,835,805 | 35,836,096 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr3 | 35,835,805 | 35,836,096 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
