QTL Accession ID | CQE68 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PHOTOSYNAB |
Trait Name | photosynthetic ability |
Published Symbol | |
Trait Synonym(s) | photosynthesis ability |
Trait Category | Biochemical |
Chromosome | 8 |
Comments | Photosynthetic ability was estimated from Rubisco content at 5 days after heading divided by leaf area. Rubisco content was determined by subjecting the soluble proteins (2 µg) to SDS-PAGE using 12.5% (w/v) gels containing 0.1% (w/v) SDS, and the gels were stained with Coomassie brilliant blue. The intensity of the band corresponding to Rubisco was measured with an image analyzer (Umax Technologies, Calif.). The area of the flag leaf was measured with a leaf area meter (Li-Cor, Neb.), and leaves were oven-dried at 80°C for 2 days and weighed. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 19,302,026-22,886,866 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 8 | 67.3-88.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQE68 | 8 | 67.3 | 88.6 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000316) | Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0020103) | Ishimaru-K et al., 2001 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007041) | Ishimaru-K et al., 2001 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Ishimaru-K et al., 2001 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 19,302,026 | 22,886,866 | ~160K SNPs x 20 accessions (McNally 2... | 1,418 | Search for SNPs |
chr8 | 19,302,026 | 22,886,866 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr8 | 19,302,026 | 22,886,866 | Huang X, et al, Nat Genetics 2010 Nov... | 6,336 | Search for SNPs |
chr8 | 19,302,026 | 22,886,866 | RiceDiversity 44K SNP assay, 34 trait... | 6,336 | Search for SNPs |
chr8 | 19,302,026 | 22,886,866 | RiceDiversity 44K SNP assay, 34 trait... | 374 | Search for SNPs |