QTL Accession ID | AQCU182 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 1 | ||||
Comments | This locus was found to have significant interaction with another locus, AQCU183, based on phenotypic data of IR64F1s population (derived from crosses between the RILs and the tester, IR64). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 11,077,466-23,118,656 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 1 | 99.8-153.1 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQCU182 | 1 | 99.8 | 153.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG811 | RFLP | Oryza sativa | qtl_marker |
To | RM23 | SSR | Oryza sativa Indica Group | qtl_marker |
To | W17065 | RFLP | Oryza sativa | qtl_marker |
To | RM129 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM24 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ776 | RFLP | Oryza sativa | qtl_marker |
To | R210 | RFLP | Oryza sativa | qtl_marker |
To | RM9 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Mei-H-W et al., 2003 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 11,077,466 | 23,118,656 | ~160K SNPs x 20 accessions (McNally 2... | 5,235 | Search for SNPs |
chr1 | 11,077,466 | 23,118,656 | '1536 chip' - 1311 SNPs x 395 rice ac... | 36 | Search for SNPs |
chr1 | 11,077,466 | 23,118,656 | Huang X, et al, Nat Genetics 2010 Nov... | 25,331 | Search for SNPs |
chr1 | 11,077,466 | 23,118,656 | RiceDiversity 44K SNP assay, 34 trait... | 25,331 | Search for SNPs |
chr1 | 11,077,466 | 23,118,656 | RiceDiversity 44K SNP assay, 34 trait... | 1,077 | Search for SNPs |