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Oryza sativa QTL "EQC0021" (primary branch)
| QTL Accession ID | EQC0021 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PBRNB | ||||||
| Trait Name | primary branch | ||||||
| Published Symbol | pbr6.1 | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 6 | ||||||
| Comments | The QTL for primary branch pbr6.1 on chromosome 6 is positively correlated with other morphological traits in the F2 population derived from cultivated Oryza sativa and the annual wild species O. nivara. The gene action is additive and phenotypic variance is 14.5%. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 564,135-564,314 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 6 | 11-21 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| EQC0021 | 6 | 11 | 21 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | MRG2805 | SSR | Oryza sativa | qtl_marker |
| To | RC6-21 | SSR | Oryza sativa | qtl_marker |
| To | RM469 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | MRG6023 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000547) | Li-C et al., 2006 (IAGP) |
| Plant Structure | (PO:0006321 ) | Li-C et al., 2006 (SM) |
| Plant Growth and Development Stage | (PO:0007130 ) | Li-C et al., 2006 (SM) |
| Growth Stage | (GRO:0007044 ) | Li-C et al., 2006 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-C et al., 2006 (SM) |
Database Cross-References (1)
SNPs (0)
