QTL Accession ID | EQC0012 | ||||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | tn4.1 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 4 | ||||||||||
Comments | The QTL for tiller number, tn4.1, is negatively correlated with other morphological traits except plant height and primary branch number, in the F2 population derived from cultivated Oryza sativa and the annual wild species O. nivara. The O. nivara allele produces an O.nivara like phenotype of tiller number where the gene action is additive. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 18,824,746-18,824,943 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 4 | 45-62 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
EQC0012 | 4 | 45 | 62 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM471 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | MRG5997 | SSR | Oryza sativa | qtl_marker |
To | RC4-25 | SSR | Oryza sativa | qtl_marker |
To | RM252 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Li-C et al., 2006 (IAGP) |
Plant Structure | (PO:0005001 ) | Li-C et al., 2006 (SM) |
Plant Growth and Development Stage | (PO:0007073 ) | Li-C et al., 2006 (SM) |
Growth Stage | (GRO:0007049 ) | Li-C et al., 2006 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-C et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 18,824,746 | 18,824,943 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr4 | 18,824,746 | 18,824,943 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 18,824,746 | 18,824,943 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr4 | 18,824,746 | 18,824,943 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr4 | 18,824,746 | 18,824,943 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |