QTL Accession ID | EQC0007 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PBRNB | ||||||
Trait Name | primary branch | ||||||
Published Symbol | pbr2.1 | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 2 | ||||||
Comments | The QTL for primary branch pbr2.1 on chromosome 2 is positively correlated with other morphological traits in the F2 population derived from cultivated Oryza sativa and the annual wild species O. nivara. The gene action is dominant and phenotypic variance is 5.4%. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 27,609,877-27,610,063 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 2 | 86-114 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
EQC0007 | 2 | 86 | 114 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RC2-86 | SSR | Oryza sativa | qtl_marker |
To | MRG2460 | SSR | Oryza sativa | qtl_marker |
To | RM221 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM341 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM240 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000547) | Li-C et al., 2006 (IAGP) |
Plant Structure | (PO:0006321 ) | Li-C et al., 2006 (SM) |
Plant Growth and Development Stage | (PO:0007130 ) | Li-C et al., 2006 (SM) |
Growth Stage | (GRO:0007044 ) | Li-C et al., 2006 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-C et al., 2006 (SM) |