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Oryza sativa QTL "EQC0002" (tiller number)
| QTL Accession ID | EQC0002 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TINB | ||||||||||
| Trait Name | tiller number | ||||||||||
| Published Symbol | tn1.1 | ||||||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||||||
| Chromosome | 1 | ||||||||||
| Comments | The QTL for tiller number, tn1.1, is negatively correlated with other morphological traits except plant height and primary branch number, in the F2 population derived from cultivated Oryza sativa and the annual wild species O. nivara. The O. nivara allele produces an O.nivara like phenotype of tiller number where the gene action is partially recessive. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,885,844-4,886,070 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 1 | 5.6-25.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| EQC0002 | 1 | 5.6 | 25.4 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RC1-6 | SSR | Oryza sativa | qtl_marker |
| To | MRG2364 | SSR | Oryza sativa | qtl_marker |
| To | RM283 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM495 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RC1-42 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000346) | Li-C et al., 2006 (IAGP) |
| Plant Structure | (PO:0005001 ) | Li-C et al., 2006 (SM) |
| Plant Growth and Development Stage | (PO:0007073 ) | Li-C et al., 2006 (SM) |
| Growth Stage | (GRO:0007049 ) | Li-C et al., 2006 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-C et al., 2006 (SM) |
Database Cross-References (1)
SNPs (0)
