QTL Accession ID | EQA0002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | qSD.3 |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 3 |
Comments | The putative QTL qSd.3 is associated with the control of seed dormancy in a rice population constructed from crosses among IR50/Tachimochi/Miyukimochi, evaluated under field conditions. Its map location detected in F1 coincided with that detected in F2 generation. The positive allele that enhances dormancy for this QTL is from the Indica parent. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 12,407,382-12,407,510 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 3 | 47.1-69.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
EQA0002 | 3 | 47.1 | 69.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM7 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM282 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM251 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM4730 | SSR | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Wan-JM et al., 2005 (IAGP) |
Plant Structure | (PO:0009010 ) | Wan-JM et al., 2005 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Wan-JM et al., 2005 (SM) |
(PO:0007132 ) | Wan-JM et al., 2005 (SM) | |
Growth Stage | (GRO:0007045 ) | Wan-JM et al., 2005 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wan-JM et al., 2005 (SM) |