QTL Accession ID | EQA0001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | qSD.1 |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 1 |
Comments | The putative QTL qSd.1 is associated with the control of seed dormancy in a rice population constructed from crosses among IR50/Tachimochi/Miyukimochi, evaluated under field conditions. Its map location detected in F1 coincided with that detected in F2 generation. The positive allele that enhances dormancy for this QTL is from the Indica parent. The QTL qSD.1 is located in the genomic region of the orthologous Vp1 gene on chromosome 1. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 36,734,135-40,167,060 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 1 | 178.6-192.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
EQA0001 | 1 | 178.6 | 192.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Wan-JM et al., 2005 (IAGP) |
Plant Structure | (PO:0009010 ) | Wan-JM et al., 2005 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Wan-JM et al., 2005 (SM) |
(PO:0007132 ) | Wan-JM et al., 2005 (SM) | |
Growth Stage | (GRO:0007045 ) | Wan-JM et al., 2005 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wan-JM et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 36,734,135 | 40,167,060 | ~160K SNPs x 20 accessions (McNally 2... | 2,310 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | Huang X, et al, Nat Genetics 2010 Nov... | 4,349 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | RiceDiversity 44K SNP assay, 34 trait... | 4,349 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | RiceDiversity 44K SNP assay, 34 trait... | 422 | Search for SNPs |