QTL Accession ID | DQE55 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | RELWCN | ||||
Trait Name | relative water content | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 12 | ||||
Comments | Mapping population: 135 doubled haploid lines derived from the cross of IR64/Azucena. Three field trials were established under upland condition: Trial 1 in the Philippines during 1995 dry season, Trial 2 in Eastern India during 1995 wet season, Trial 3 in the Philippines during 1996 dry season. This QTL was identified in Trial 3. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-24,586,392 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 12 | 81.2-94.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
DQE55 | 12 | 81.2 | 94.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO344 | RFLP | Avena sativa | qtl_marker |
To | RG901 | RFLP | Oryza sativa | qtl_marker |
To | RG463 | RFLP | Oryza sativa | qtl_marker |
To | RG457 | RFLP | Oryza sativa | qtl_marker |
To | RG958 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000136) | Courtois-B et al., 2000 (IAGP) |
Plant Structure | (PO:0009011) | Courtois-B et al., 2000 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0009012) | Courtois-B et al., 2000 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Courtois-B et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Courtois-B et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,603,156 | 24,586,392 | ~160K SNPs x 20 accessions (McNally 2... | 538 | Search for SNPs |
chr12 | 23,603,156 | 24,586,392 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr12 | 23,603,156 | 24,586,392 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,603,156 | 24,586,392 | Huang X, et al, Nat Genetics 2010 Nov... | 3,031 | Search for SNPs |
chr12 | 23,603,156 | 24,586,392 | RiceDiversity 44K SNP assay, 34 trait... | 3,031 | Search for SNPs |
chr12 | 23,603,156 | 24,586,392 | RiceDiversity 44K SNP assay, 34 trait... | 110 | Search for SNPs |