QTL Accession ID | DQE3 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFDRY |
Trait Name | leaf drying |
Published Symbol | |
Trait Synonym(s) |
LD leaf drying |
Trait Category | Abiotic stress |
Chromosome | 4 |
Comments | Mapping population: 135 doubled haploid lines derived from the cross of IR64/Azucena. Three field trials were established under upland condition: Trial 1 in the Philippines during 1995 dry season, Trial 2 in Eastern India during 1995 wet season, Trial 3 in the Philippines during 1996 dry season. This QTL was identified in Trial 3. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 13,634,515-13,635,012 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 4 | 15.7-28.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
DQE3 | 4 | 15.7 | 28.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG91 | RFLP | Oryza sativa | qtl_marker |
To | RG908 | RFLP | Oryza sativa | qtl_marker |
To | RG190 | RFLP | Oryza sativa | qtl_marker |
To | RG449 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000446) | Courtois-B et al., 2000 (IAGP) |
Plant Structure | (PO:0009025) | Courtois-B et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Courtois-B et al., 2000 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Courtois-B et al., 2000 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Courtois-B et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 13,634,515 | 13,635,012 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr4 | 13,634,515 | 13,635,012 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 13,634,515 | 13,635,012 | Huang X, et al, Nat Genetics 2010 Nov... | 10 | Search for SNPs |
chr4 | 13,634,515 | 13,635,012 | RiceDiversity 44K SNP assay, 34 trait... | 10 | Search for SNPs |
chr4 | 13,634,515 | 13,635,012 | RiceDiversity 44K SNP assay, 34 trait... | 0 |