QTL Accession ID | DQE18 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | LFRL | ||||||
Trait Name | leaf rolling | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||||
Chromosome | 3 | ||||||
Comments | Mapping population: 135 doubled haploid lines derived from the cross of IR64/Azucena. Three field trials were established under upland condition: Trial 1 in the Philippines during 1995 dry season, Trial 2 in Eastern India during 1995 wet season, Trial 3 in the Philippines during 1996 dry season. This QTL was identified in Trial 2. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 10,599,177-15,472,481 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 51.3-86.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
DQE18 | 3 | 51.3 | 86.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ574 | RFLP | Oryza sativa | qtl_marker |
To | RZ284 | RFLP | Oryza sativa | qtl_marker |
To | RZ678 | RFLP | Oryza sativa | qtl_marker |
To | RZ394 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000085) | Courtois-B et al., 2000 (IAGP) |
Plant Structure | (PO:0009025) | Courtois-B et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Courtois-B et al., 2000 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Courtois-B et al., 2000 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Courtois-B et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 10,599,177 | 15,472,481 | ~160K SNPs x 20 accessions (McNally 2... | 2,224 | Search for SNPs |
chr3 | 10,599,177 | 15,472,481 | '1536 chip' - 1311 SNPs x 395 rice ac... | 20 | Search for SNPs |
chr3 | 10,599,177 | 15,472,481 | Huang X, et al, Nat Genetics 2010 Nov... | 8,190 | Search for SNPs |
chr3 | 10,599,177 | 15,472,481 | RiceDiversity 44K SNP assay, 34 trait... | 8,190 | Search for SNPs |
chr3 | 10,599,177 | 15,472,481 | RiceDiversity 44K SNP assay, 34 trait... | 516 | Search for SNPs |