QTL Accession ID | DQA8 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CELMBSTB |
Trait Name | cell membrane stability |
Published Symbol | QCMS11.1 |
Trait Synonym(s) |
cell-membrane stability cms |
Trait Category | Abiotic stress |
Chromosome | 11 |
Comments | Cell-membrane stability (CMS) is a physiological index used for evaluating drought and temperature tolerance. The authors used 154 double haploid lines derived from culturing F1 anthers of a cross between CT9993-5-10-1M and IR62266-42-6-2 to assess the CMS under drought stress. Drought stress was initiated at 50 days after sowing by withholding the water supply. The CMS measurement was carried out by following the protocol of Bum and Ebercon (1981). The QTL analysis was done using the composite interval mapping (CIM). The threshold for QTL detection was set a LOD score of 3.0. The LOD for this QTL is 3.42. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 19,565,059-19,565,672 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 11 | 67-71.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
DQA8 | 11 | 67 | 71.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO365 | RFLP | Avena sativa | qtl_marker |
To | RM21 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM206 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000467) | Tripathy-J-N et al., 2000 (IAGP) |
Plant Structure | (PO:0009002) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0009012) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tripathy-J-N et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 19,565,059 | 19,565,672 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
chr11 | 19,565,059 | 19,565,672 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr11 | 19,565,059 | 19,565,672 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr11 | 19,565,059 | 19,565,672 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr11 | 19,565,059 | 19,565,672 | RiceDiversity 44K SNP assay, 34 trait... | 0 |