QTL Accession ID | CQZ17 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | Fh9-1 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 9 | ||||
Comments | The trait plant height was measured from soil surface to the tip of the upper most grain in the panicle excluding awn. It was measured on 5 plants in the center of each plot. Measurements were taken at the maturity stage. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 15,545,371-15,547,564 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Zejiang IR64/Azu DH QTL 2001 | BNL6.32 | 9 | 70.3-81.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQZ17 | 9 | 70.3 | 81.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ422 | RFLP | Oryza sativa | qtl_marker |
To | RZ206 | RFLP | Oryza sativa | qtl_marker |
To | RZ228 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Cao-G-Q et al., 2001 (IAGP) |
Plant Structure | (PO:0009006) | Cao-G-Q et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Cao-G-Q et al., 2001 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Cao-G-Q et al., 2001 (SM) |
(GRO:0007139) | Gramene curators, 2007 (IC) | |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cao-G-Q et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 15,545,371 | 15,547,564 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr9 | 15,545,371 | 15,547,564 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr9 | 15,545,371 | 15,547,564 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr9 | 15,545,371 | 15,547,564 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr9 | 15,545,371 | 15,547,564 | RiceDiversity 44K SNP assay, 34 trait... | 0 |