QTL Accession ID | CQX29 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | INLG |
Trait Name | internode length |
Published Symbol | qIN6-6 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 6 |
Comments | Population used was BC1F3 Koshihikari x Kasalath. Trait assayed for length of the sixth internode below the panicle, determined at maturity. Sampled on single randomly chosen plant. Additive effect due to Koshihikari allele. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 8,062,746-11,681,093 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 6 | 32.1-40.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQX29 | 6 | 32.1 | 40.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C214 | RFLP | Oryza sativa | qtl_marker |
To | R2171 | RFLP | Oryza sativa | qtl_marker |
To | S2539 | RFLP | Oryza sativa | qtl_marker |
To | R2123 | RFLP | Oryza sativa | qtl_marker |
To | G200 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000145) | Yamamoto-T et al., 2001 (IAGP) |
Plant Structure | (PO:0005005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 8,062,746 | 11,681,093 | ~160K SNPs x 20 accessions (McNally 2... | 2,038 | Search for SNPs |
chr6 | 8,062,746 | 11,681,093 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr6 | 8,062,746 | 11,681,093 | Huang X, et al, Nat Genetics 2010 Nov... | 9,197 | Search for SNPs |
chr6 | 8,062,746 | 11,681,093 | RiceDiversity 44K SNP assay, 34 trait... | 9,197 | Search for SNPs |
chr6 | 8,062,746 | 11,681,093 | RiceDiversity 44K SNP assay, 34 trait... | 355 | Search for SNPs |