QTL Accession ID | CQX28 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | INLG |
Trait Name | internode length |
Published Symbol | qIN6-5 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 5 |
Comments | Population used was BC1F3 Koshihikari x Kasalath. Trait assayed for length of the sixth internode below the panicle, determined at maturity. Sampled on single randomly chosen plant. Additive effect due to Kasalath allele. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 20,626,647-26,934,954 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 5 | 55.4-68.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQX28 | 5 | 55.4 | 68.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1230 | RFLP | Oryza sativa | qtl_marker |
To | C128 | RFLP | Oryza sativa | qtl_marker |
To | C246 | RFLP | Oryza sativa | qtl_marker |
To | R1553 | RFLP | Oryza sativa | qtl_marker |
To | R372 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000145) | Yamamoto-T et al., 2001 (IAGP) |
Plant Structure | (PO:0005005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 20,626,647 | 26,934,954 | ~160K SNPs x 20 accessions (McNally 2... | 4,286 | Search for SNPs |
chr5 | 20,626,647 | 26,934,954 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr5 | 20,626,647 | 26,934,954 | Huang X, et al, Nat Genetics 2010 Nov... | 7,314 | Search for SNPs |
chr5 | 20,626,647 | 26,934,954 | RiceDiversity 44K SNP assay, 34 trait... | 7,314 | Search for SNPs |
chr5 | 20,626,647 | 26,934,954 | RiceDiversity 44K SNP assay, 34 trait... | 698 | Search for SNPs |