QTL Accession ID | CQX16 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | INLG |
Trait Name | internode length |
Published Symbol | qIN1-4 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 4 |
Comments | Population used was BC1F3 Koshihikari x Kasalath. Trait assayed for length of the first internode below the panicle, determined at maturity. Sampled on single randomly chosen plant. Additive effect due to Koshihikari allele. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 19,928,370-29,389,036 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 4 | 40.7-68.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQX16 | 4 | 40.7 | 68.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1016 | RFLP | Oryza sativa | qtl_marker |
To | C1100 | RFLP | Oryza sativa | qtl_marker |
To | C513 | RFLP | Oryza sativa | qtl_marker |
To | C891 | RFLP | Oryza sativa | qtl_marker |
To | R93 | RFLP | Oryza sativa | qtl_marker |
To | S733 | RFLP | Oryza sativa | qtl_marker |
To | S10644 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000145) | Yamamoto-T et al., 2001 (IAGP) |
Plant Structure | (PO:0005005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 19,928,370 | 29,389,036 | ~160K SNPs x 20 accessions (McNally 2... | 3,759 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | Huang X, et al, Nat Genetics 2010 Nov... | 18,208 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | RiceDiversity 44K SNP assay, 34 trait... | 18,208 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | RiceDiversity 44K SNP assay, 34 trait... | 801 | Search for SNPs |