QTL Accession ID | CQX13 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PNLG | ||||||
Trait Name | panicle length | ||||||
Published Symbol | qPL-4 | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 4 | ||||||
Comments | Population used was BC1F3 Koshihikari x Kasalath. Trait assayed for length of the panicle at maturity. Sampled on single randomly chosen plant. Additive effect due to Koshihikari allele. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 19,928,370-29,389,036 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 4 | 40.7-68.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQX13 | 4 | 40.7 | 68.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1016 | RFLP | Oryza sativa | qtl_marker |
To | C1100 | RFLP | Oryza sativa | qtl_marker |
To | C513 | RFLP | Oryza sativa | qtl_marker |
To | C891 | RFLP | Oryza sativa | qtl_marker |
To | R93 | RFLP | Oryza sativa | qtl_marker |
To | S733 | RFLP | Oryza sativa | qtl_marker |
To | S10644 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000040) | Yamamoto-T et al., 2001 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 19,928,370 | 29,389,036 | ~160K SNPs x 20 accessions (McNally 2... | 3,759 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | Huang X, et al, Nat Genetics 2010 Nov... | 18,208 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | RiceDiversity 44K SNP assay, 34 trait... | 18,208 | Search for SNPs |
chr4 | 19,928,370 | 29,389,036 | RiceDiversity 44K SNP assay, 34 trait... | 801 | Search for SNPs |