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Oryza sativa QTL "CQX1" (days to heading)
| QTL Accession ID | CQX1 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | qDTH-3 | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 3 | ||||
| Comments | Population used was BC1F3 Koshihikari x Kasalath. Trait assayed for number of days from sowing to the first panicle emergence. Sampled on single randomly chosen plant. Additive effect due to Kasalath allele. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 28,527,366-35,443,016 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 3 | 105.8-131.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQX1 | 3 | 105.8 | 131.8 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1351 | RFLP | Oryza sativa | qtl_marker |
| To | C944 | RFLP | Oryza sativa | qtl_marker |
| To | R2856 | RFLP | Oryza sativa | qtl_marker |
| To | R3226 | RFLP | Oryza sativa | qtl_marker |
| To | R1925 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Yamamoto-T et al., 2001 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2001 (SM) |
Database Cross-References (1)
SNPs (36,412)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 28,527,366 | 35,443,016 | ~160K SNPs x 20 accessions (McNally 2... | 4,237 | Search for SNPs |
| chr3 | 28,527,366 | 35,443,016 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
| chr3 | 28,527,366 | 35,443,016 | Huang X, et al, Nat Genetics 2010 Nov... | 15,713 | Search for SNPs |
| chr3 | 28,527,366 | 35,443,016 | RiceDiversity 44K SNP assay, 34 trait... | 15,713 | Search for SNPs |
| chr3 | 28,527,366 | 35,443,016 | RiceDiversity 44K SNP assay, 34 trait... | 730 | Search for SNPs |
