QTL Accession ID | CQU17 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RELACIDPASEACT |
Trait Name | relative acid phosphatase activity |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 1 |
Comments | Relative acid phosphatase activity was measured as ratio of enzymatic activity induced in total root extracts of plants grown in liquid nutrient media contatining deficient phosphorus quantities (0.05mg/L) to the one grown in normal quantities (10mg/L). The QTL was epistatic to QTL accession CQU18 on linkage group 9. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 41,967,890-41,969,197 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNZU IR20/IR55178 RI QTL 1998 | BNL6.32 | 1b | 58-74.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQU17 | 1 | 58 | 74.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG236 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000647) | Hu-B et al., 2001 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hu-B et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 41,967,890 | 41,969,197 | ~160K SNPs x 20 accessions (McNally 2... | 8 | Search for SNPs |
chr1 | 41,967,890 | 41,969,197 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 41,967,890 | 41,969,197 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr1 | 41,967,890 | 41,969,197 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr1 | 41,967,890 | 41,969,197 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |