QTL Accession ID | CQU13 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ACIDPASEACT |
Trait Name | acid phosphatase activity |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 3 |
Comments | Acid phosphatase activity was measured in total root extracts of plants grown in liquid nutrient media contatining deficient phosphorus quantities (0.05mg/L). The QTL was epistatic to QTL accession CQU14 on linkage group 6. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 19,411,563-19,412,007 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNZU IR20/IR55178 RI QTL 1998 | BNL6.32 | 3 | 27.6-30.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQU13 | 3 | 27.6 | 30.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ394 | RFLP | Oryza sativa | qtl_marker |
To | RZ576 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000705) | Hu-B et al., 2001 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hu-B et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 19,411,563 | 19,412,007 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 19,411,563 | 19,412,007 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 19,411,563 | 19,412,007 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr3 | 19,411,563 | 19,412,007 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr3 | 19,411,563 | 19,412,007 | RiceDiversity 44K SNP assay, 34 trait... | 0 |