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Oryza sativa QTL "CQU1" (acid phosphatase activity)
| QTL Accession ID | CQU1 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ACIDPASEACT |
| Trait Name | acid phosphatase activity |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Biochemical |
| Chromosome | 1 |
| Comments | Acid phosphatase activity was measured in total root extracts of plants grown in liquid nutrient media contatining normal phosphorus quantities (10mg/L). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 41,967,890-41,969,197 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNZU IR20/IR55178 RI QTL 1998 | BNL6.32 | 1b | 37.6-40.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQU1 | 1 | 37.6 | 40.9 |
Associated Markers (1)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG236 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000705) | Hu-B et al., 2001 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hu-B et al., 2001 (SM) |
Database Cross-References (1)
SNPs (19)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 41,967,890 | 41,969,197 | ~160K SNPs x 20 accessions (McNally 2... | 8 | Search for SNPs |
| chr1 | 41,967,890 | 41,969,197 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 41,967,890 | 41,969,197 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
| chr1 | 41,967,890 | 41,969,197 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
| chr1 | 41,967,890 | 41,969,197 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
