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Oryza sativa QTL "CQT1" (brown planthopper resistance)
| QTL Accession ID | CQT1 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BPHRS |
| Trait Name | brown planthopper resistance |
| Published Symbol | Qbp1 |
| Trait Synonym(s) | BPH |
| Trait Category | Biotic stress |
| Chromosome | 4 |
| Comments | Assay population used was F3. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 3,546,753-14,707,274 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Wuhan B5/Ming63 F2 QTL 2000 | BNL6.32 | 4 | 26.7-41.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQT1 | 4 | 26.7 | 41.1 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1401 | RFLP | Oryza sativa | qtl_marker |
| To | C820 | RFLP | Oryza sativa | qtl_marker |
| To | Y3635R | RFLP | Oryza sativa | qtl_marker |
| To | S11182 | RFLP | Oryza sativa | qtl_marker |
| To | RZ656 | RFLP | Oryza sativa | qtl_marker |
| To | S2713 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000424) | Huang-Z et al., 2001 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Huang-Z et al., 2001 (SM) |
Database Cross-References (1)
SNPs (48,420)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 3,546,753 | 14,707,274 | ~160K SNPs x 20 accessions (McNally 2... | 2,736 | Search for SNPs |
| chr4 | 3,546,753 | 14,707,274 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
| chr4 | 3,546,753 | 14,707,274 | Huang X, et al, Nat Genetics 2010 Nov... | 22,447 | Search for SNPs |
| chr4 | 3,546,753 | 14,707,274 | RiceDiversity 44K SNP assay, 34 trait... | 22,447 | Search for SNPs |
| chr4 | 3,546,753 | 14,707,274 | RiceDiversity 44K SNP assay, 34 trait... | 760 | Search for SNPs |
