QTL Accession ID | CQS2 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SRTLG |
Trait Name | seminal root length |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 1 |
Comments | Assayed for seminal root length in paper culture. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 32,310,761-38,531,467 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Zhejian IR1552/Azu RI QTL 2001 | BNL6.32 | 1 | 113.8-154.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQS2 | 1 | 113.8 | 154.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG690 | RFLP | Oryza sativa | qtl_marker |
To | RZ730 | RFLP | Oryza sativa | qtl_marker |
To | RG109 | RFLP | Oryza sativa | qtl_marker |
To | RG462 | RFLP | Oryza sativa | qtl_marker |
To | RG381 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000586) | Zhang-W-P et al., 2001 (IAGP) |
Plant Structure | (PO:0000046) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhang-W-P et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 32,310,761 | 38,531,467 | ~160K SNPs x 20 accessions (McNally 2... | 4,530 | Search for SNPs |
chr1 | 32,310,761 | 38,531,467 | '1536 chip' - 1311 SNPs x 395 rice ac... | 23 | Search for SNPs |
chr1 | 32,310,761 | 38,531,467 | Huang X, et al, Nat Genetics 2010 Nov... | 10,791 | Search for SNPs |
chr1 | 32,310,761 | 38,531,467 | RiceDiversity 44K SNP assay, 34 trait... | 10,791 | Search for SNPs |
chr1 | 32,310,761 | 38,531,467 | RiceDiversity 44K SNP assay, 34 trait... | 882 | Search for SNPs |