QTL Accession ID | CQR9 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | FLRCL |
Trait Name | flour color |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 8 |
Comments | The flour color was measured using the chromometer following the CIE 1976 color system. The brightness (L) was recorded for a value ranging from 0 for black to 100 for white. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 19,785,885-25,592,993 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 8 | 50.4-93 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQR9 | 8 | 50.4 | 93 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | L363 | RFLP | Oryza sativa | qtl_marker |
To | RM223 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM210 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM149 | SSR | Oryza sativa | qtl_marker |
To | RZ66 | RFLP | Oryza sativa | qtl_marker |
To | R727 | RFLP | Oryza sativa | qtl_marker |
To | G1149 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000651) | Tan-Y-F et al., 2001 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Y-F et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 19,785,885 | 25,592,993 | ~160K SNPs x 20 accessions (McNally 2... | 1,638 | Search for SNPs |
chr8 | 19,785,885 | 25,592,993 | '1536 chip' - 1311 SNPs x 395 rice ac... | 16 | Search for SNPs |
chr8 | 19,785,885 | 25,592,993 | Huang X, et al, Nat Genetics 2010 Nov... | 9,392 | Search for SNPs |
chr8 | 19,785,885 | 25,592,993 | RiceDiversity 44K SNP assay, 34 trait... | 9,392 | Search for SNPs |
chr8 | 19,785,885 | 25,592,993 | RiceDiversity 44K SNP assay, 34 trait... | 471 | Search for SNPs |