QTL Accession ID | CQQ31 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RTWT |
Trait Name | root weight |
Published Symbol | |
Trait Synonym(s) | total root weight |
Trait Category | Abiotic stress |
Chromosome | 1 |
Comments | The total root mass or the weight was determined in mg, by adding the dry weight of the roots present in two soil sections namely, 30-60 and 60-90cm deep. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 32,310,761-34,940,769 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 1 | 120.5-129.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQQ31 | 1 | 120.5 | 129.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG690 | RFLP | Oryza sativa | qtl_marker |
To | RZ730 | RFLP | Oryza sativa | qtl_marker |
To | RZ19 | RFLP | Oryza sativa | qtl_marker |
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000279) | Shen-L et al., 2001 (IAGP) |
Plant Structure | (PO:0009005) | Shen-L et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Shen-L et al., 2001 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Shen-L et al., 2001 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Shen-L et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 32,310,761 | 34,940,769 | ~160K SNPs x 20 accessions (McNally 2... | 1,984 | Search for SNPs |
chr1 | 32,310,761 | 34,940,769 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
chr1 | 32,310,761 | 34,940,769 | Huang X, et al, Nat Genetics 2010 Nov... | 5,615 | Search for SNPs |
chr1 | 32,310,761 | 34,940,769 | RiceDiversity 44K SNP assay, 34 trait... | 5,615 | Search for SNPs |
chr1 | 32,310,761 | 34,940,769 | RiceDiversity 44K SNP assay, 34 trait... | 413 | Search for SNPs |