QTL Accession ID | CQQ30 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 2 | ||||||||||
Comments | The total number of tillers per plant were counted at 43 days after sowing. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 19,865,083-24,566,182 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 2 | 40.6-63.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQQ30 | 2 | 40.6 | 63.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG157 | RFLP | Oryza sativa | qtl_marker |
To | RZ318 | RFLP | Oryza sativa | qtl_marker |
To | RG171 | RFLP | Oryza sativa | qtl_marker |
To | RZ58 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Shen-L et al., 2001 (IAGP) |
Plant Structure | (PO:0005001) | Shen-L et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Shen-L et al., 2001 (SM) |
(PO:0007073) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Shen-L et al., 2001 (SM) |
(GRO:0007049) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Shen-L et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 19,865,083 | 24,566,182 | ~160K SNPs x 20 accessions (McNally 2... | 2,639 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | Huang X, et al, Nat Genetics 2010 Nov... | 13,534 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | RiceDiversity 44K SNP assay, 34 trait... | 13,534 | Search for SNPs |
chr2 | 19,865,083 | 24,566,182 | RiceDiversity 44K SNP assay, 34 trait... | 564 | Search for SNPs |