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Oryza sativa QTL "CQQ19" (root length)
| QTL Accession ID | CQQ19 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | RTLG | ||||
| Trait Name | root length | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||
| Chromosome | 2 | ||||
| Comments | The maximum root length was determined by measuring the length of the longest nodal root beginning from the lowest soil section namely, 60-90cm deep. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 17,484,665-19,866,086 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 2 | 25.8-40.6 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQQ19 | 2 | 25.8 | 40.6 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | b9 | RFLP | Hordeum vulgare | qtl_marker |
| To | RG171 | RFLP | Oryza sativa | qtl_marker |
| To | RG157 | RFLP | Oryza sativa | qtl_marker |
| To | RZ318 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000227) | Yadav-R et al., 1997 (IAGP) Shen-L et al., 2001 (IAGP) |
| Plant Structure | (PO:0009005) | Yadav-R et al., 1997 (SM) Shen-L et al., 2001 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Yadav-R et al., 1997 (SM) Shen-L et al., 2001 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Yadav-R et al., 1997 (SM) Shen-L et al., 2001 (SM) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yadav-R et al., 1997 (SM) Shen-L et al., 2001 (SM) |
Database Cross-References (2)
SNPs (13,980)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 17,484,665 | 19,866,086 | ~160K SNPs x 20 accessions (McNally 2... | 736 | Search for SNPs |
| chr2 | 17,484,665 | 19,866,086 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr2 | 17,484,665 | 19,866,086 | Huang X, et al, Nat Genetics 2010 Nov... | 6,510 | Search for SNPs |
| chr2 | 17,484,665 | 19,866,086 | RiceDiversity 44K SNP assay, 34 trait... | 6,510 | Search for SNPs |
| chr2 | 17,484,665 | 19,866,086 | RiceDiversity 44K SNP assay, 34 trait... | 215 | Search for SNPs |
