QTL Accession ID | CQP8 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | COLDTL |
Trait Name | cold tolerance |
Published Symbol | qCT-11 |
Trait Synonym(s) |
ctol low temperature resistance |
Trait Category | Abiotic stress |
Chromosome | 11 |
Comments | At maturity, cold temperature tolerance was measured as a percent floret sterility of nine panicles from three plants (three panicles per plant). Linkage analyses were performed using MAPMAKER/EXP 3.0. QTLs were detected by a single point analyses performed by 1-way ANOVA with SAS GLM PROC. The threshold probability level was <0.01. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 1,491,600-2,523,808 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIAR Aki/Kosh DH QTL 2003 | BNL6.32 | 11 | 0-27.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQP8 | 11 | 0 | 27.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C734 | RFLP | Oryza sativa | qtl_marker |
To | C83 | RFLP | Oryza sativa | qtl_marker |
To | S1609 | RFLP | Oryza sativa | qtl_marker |
To | R2821 | RFLP | Oryza sativa | qtl_marker |
To | G6018 | RFLP | Oryza sativa | qtl_marker |
To | G235 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000303) | Takeuchi-Y et al., 2001 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007174) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Takeuchi-Y et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 1,491,600 | 2,523,808 | ~160K SNPs x 20 accessions (McNally 2... | 359 | Search for SNPs |
chr11 | 1,491,600 | 2,523,808 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr11 | 1,491,600 | 2,523,808 | Huang X, et al, Nat Genetics 2010 Nov... | 1,987 | Search for SNPs |
chr11 | 1,491,600 | 2,523,808 | RiceDiversity 44K SNP assay, 34 trait... | 1,987 | Search for SNPs |
chr11 | 1,491,600 | 2,523,808 | RiceDiversity 44K SNP assay, 34 trait... | 66 | Search for SNPs |