Oryza sativa QTL "CQN16" (soluble protein content)

QTL Accession ID	CQN16
Species	Oryza sativa (Rice) [ GR_tax:013681 ]
Trait Symbol	SPROTCN
Trait Name	soluble protein content
Published Symbol
Trait Synonym(s)	Soluble/Total protein
Trait Category	Biochemical
Chromosome	7
Comments	For the assay, the blade of leaf 9 was harvested after the emergence of leaf 11 from the sheath of leaf 10. The total soluble protein content in developing leaf blades was determined by the Bradford method. Single marker regressions were used to detect the association between markers and each trait using qGENE software. Significant differences (P<0.05) in marker class means were interpreted as likely linkage of each trait to the marker locus.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 7

796,477-16,874,331 bp

View Comparative Map

Details

CMap Preview

Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

JRGP Nip/Kas F2 QTL 2000

BNL6.32

3.9-56.2 cM

View Comparative Map

Details

CMap Preview

QTL DB Map Position (1)

Name	Chromosome	Start	Stop
CQN16	7	3.9	56.2

Associated Markers (100)

Direction	Name	Type	Species	Assoc. Type
To	asg8	RFLP	Zea mays subsp. mays	qtl_marker
To	B2G4	RFLP	Hordeum vulgare	qtl_marker
To	C1006	RFLP	Oryza sativa	qtl_marker
To	C1023	RFLP	Oryza sativa	qtl_marker
To	C1057	RFLP	Oryza sativa	qtl_marker
To	C10610S	RFLP	Oryza sativa	qtl_marker
To	C11393S	RFLP	Oryza sativa	qtl_marker
To	C1226	RFLP	Oryza sativa	qtl_marker
To	C12561S	RFLP	Oryza sativa	qtl_marker
To	C12887S	RFLP	Oryza sativa	qtl_marker
To	C145	RFLP	Oryza sativa	qtl_marker
To	C1464	RFLP	Oryza sativa	qtl_marker
To	C226	RFLP	Oryza sativa	qtl_marker
To	C2523S	RFLP	Oryza sativa	qtl_marker
To	C261	RFLP	Oryza sativa	qtl_marker
To	C383	RFLP	Oryza sativa	qtl_marker
To	C39	RFLP	Oryza sativa	qtl_marker
To	C479	RFLP	Oryza sativa	qtl_marker
To	C492	RFLP	Oryza sativa	qtl_marker
To	C51126S	RFLP	Oryza sativa	qtl_marker
To	C61218S	RFLP	Oryza sativa	qtl_marker
To	C615	RFLP	Oryza sativa	qtl_marker
To	C62085S	RFLP	Oryza sativa	qtl_marker
To	C636	RFLP	Oryza sativa	qtl_marker
To	C67	RFLP	Oryza sativa	qtl_marker
To	C735	RFLP	Oryza sativa	qtl_marker
To	C796	RFLP	Oryza sativa	qtl_marker
To	E3124S	RFLP	Oryza sativa	qtl_marker
To	R10691S	RFLP	Oryza sativa	qtl_marker
To	R10148S	RFLP	Oryza sativa	qtl_marker
To	E20128	RFLP	Oryza sativa	qtl_marker
To	V220	RFLP	Oryza sativa	qtl_marker
To	RG528	RFLP	Oryza sativa	qtl_marker
To	S20268	RFLP	Oryza sativa	qtl_marker
To	S14083	RFLP	Oryza sativa	qtl_marker
To	R1561	RFLP	Oryza sativa	qtl_marker
To	R565	RFLP	Oryza sativa	qtl_marker
To	S20567S	RFLP	Oryza sativa	qtl_marker
To	S12540	RFLP	Oryza sativa	qtl_marker
To	R2829	RFLP	Oryza sativa	qtl_marker
To	S11633	RFLP	Oryza sativa	qtl_marker
To	S10012	RFLP	Oryza sativa	qtl_marker
To	L538T7	RFLP	Oryza sativa	qtl_marker
To	E50408S	RFLP	Oryza sativa	qtl_marker
To	RZ488	RFLP	Oryza sativa	qtl_marker
To	R2401	RFLP	Oryza sativa	qtl_marker
To	CSU109	RFLP	Zea mays subsp. mays	qtl_marker
To	S4774	RFLP	Oryza sativa	qtl_marker
To	R1488	RFLP	Oryza sativa	qtl_marker
To	R3113	RFLP	Oryza sativa	qtl_marker
To	R1807	RFLP	Oryza sativa	qtl_marker
To	E12196S	RFLP	Oryza sativa	qtl_marker
To	E10534S	RFLP	Oryza sativa	qtl_marker
To	UMC135	RFLP	Zea mays subsp. mays	qtl_marker
To	R277	RFLP	Oryza sativa	qtl_marker
To	G338	RFLP	Oryza sativa	qtl_marker
To	G2009	RFLP	Oryza sativa	qtl_marker
To	L627	RFLP	Oryza sativa	qtl_marker
To	V218	RFLP	Oryza sativa	qtl_marker
To	M323	RFLP	Zea mays subsp. mays	qtl_marker
To	L538T3	RFLP	Oryza sativa	qtl_marker
To	R1582	RFLP	Oryza sativa	qtl_marker
To	S21852S	RFLP	Oryza sativa	qtl_marker
To	R46	RFLP	Oryza sativa	qtl_marker
To	Y2707L	RFLP	Oryza sativa	qtl_marker
To	G3007	RFLP	Oryza sativa	qtl_marker
To	R610	RFLP	Oryza sativa	qtl_marker
To	G1068	RFLP	Oryza sativa	qtl_marker
To	S20922S	RFLP	Oryza sativa	qtl_marker
To	R10193S	RFLP	Oryza sativa	qtl_marker
To	E60860S	RFLP	Oryza sativa	qtl_marker
To	S10674	RFLP	Oryza sativa	qtl_marker
To	E1160S	RFLP	Oryza sativa	qtl_marker
To	RG30	RFLP	Oryza sativa	qtl_marker
To	E60726S	RFLP	Oryza sativa	qtl_marker
To	S21350S	RFLP	Oryza sativa	qtl_marker
To	E10074S	RFLP	Oryza sativa	qtl_marker
To	R658	RFLP	Oryza sativa	qtl_marker
To	E51014	RFLP	Oryza sativa	qtl_marker
To	Y5685R	RFLP	Oryza sativa	qtl_marker
To	E50915	RFLP	Oryza sativa	qtl_marker
To	R742	RFLP	Oryza sativa	qtl_marker
To	R1382	RFLP	Oryza sativa	qtl_marker
To	Y1055L	RFLP	Oryza sativa	qtl_marker
To	S12669S	RFLP	Oryza sativa	qtl_marker
To	S10038	RFLP	Oryza sativa	qtl_marker
To	R1788	RFLP	Oryza sativa	qtl_marker
To	Y4622L	RFLP	Oryza sativa	qtl_marker
To	R1233	RFLP	Oryza sativa	qtl_marker
To	R643	RFLP	Oryza sativa	qtl_marker
To	E30481S	RFLP	Oryza sativa	qtl_marker
To	C60626	RFLP	Oryza sativa	qtl_marker
To	E3307S	RFLP	Oryza sativa	qtl_marker
To	R430	RFLP	Oryza sativa	qtl_marker
To	R606	RFLP	Oryza sativa	qtl_marker
To	R1440	RFLP	Oryza sativa	qtl_marker
To	E61991S	RFLP	Oryza sativa	qtl_marker
To	PSR112	RFLP	Triticum aestivum	qtl_marker
To	R646	RFLP	Oryza sativa	qtl_marker
To	Y2707R	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (7)

Term Type	Term	Evidence
Trait Ontology	(TO:0000325)	Obara-M et al., 2001 (IAGP)
Plant Structure	(PO:0020103)	Obara-M et al., 2001 (SM)
	(PO:0009010)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007038)	Obara-M et al., 2001 (SM)
Growth Stage	(GRO:0007045)	Obara-M et al., 2001 (SM)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Obara-M et al., 2001 (SM)

Database Cross-References (1)

Gramene Literature	Obara-M, Kajiura-M, Fukuta-Y, Yano-M, Hayashi-M, Yamaya-T, Sato-T, "Mapping of QTLs associated with cytosolic glutamine synthetase and NADH-glutamate synthase in rice (Oryza sativa L.)", Journal of experimental botany, 2001, vol. 52, pp. 1209-1217

SNPs (79,623)

Chr	Start	Stop	Exp	Num. SNP Positions
chr7	796,477	16,874,331	~160K SNPs x 20 accessions (McNally 2...	2,494	Search for SNPs
chr7	796,477	16,874,331	'1536 chip' - 1311 SNPs x 395 rice ac...	29	Search for SNPs
chr7	796,477	16,874,331	Huang X, et al, Nat Genetics 2010 Nov...	38,122	Search for SNPs
chr7	796,477	16,874,331	RiceDiversity 44K SNP assay, 34 trait...	38,122	Search for SNPs
chr7	796,477	16,874,331	RiceDiversity 44K SNP assay, 34 trait...	856	Search for SNPs

Browse by Trait Category: Abiotic stress \| Anatomy \| Biochemical \| Biotic stress \| Development \| Quality \| Sterility or fertility \| Vigor \| Yield
Find:	In:	Species: