QTL Accession ID | CQJ15 | ||||||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
Trait Symbol | PNNB | ||||||||||||
Trait Name | panicle number | ||||||||||||
Published Symbol | |||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||
Chromosome | 12 | ||||||||||||
Comments | The field experiment was carried out at Hangzhou, China. The germinated seeds were sown in a seedling bed on May 10, 1999, and seedlings were transferred to a paddy field 30 days later, with a single plant per hill spaced at 15 × 20 cm. Four-row plots were planted with eight plants per row, with parents being grown after every tenth plot as a control. The central eight plants in each plot were used for measuring panicle number. Panicle number was recorded after harvest. Fertility and cultivation practices were consistent with optimum rice production for these regions. One-way ANOVA (SAS/6.11, GLM) and interval-mapping analysis (Mapmaker/QTL) were performed for detecting molecular markers and QTLs. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-26,017,884 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Zejiang IR64/Azu DH QTL 2001 | BNL6.32 | 12 | 87.1-103 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQJ15 | 12 | 87.1 | 103 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO344 | RFLP | Avena sativa | qtl_marker |
To | RG958 | RFLP | Oryza sativa | qtl_marker |
To | RG901 | RFLP | Oryza sativa | qtl_marker |
To | RG181 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000152) | Liao-C-Y et al., 2001 (IAGP) |
Plant Structure | (PO:0009049) | Liao-C-Y et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Liao-C-Y et al., 2001 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Liao-C-Y et al., 2001 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Liao-C-Y et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,603,156 | 26,017,884 | ~160K SNPs x 20 accessions (McNally 2... | 1,372 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,603,156 | 26,017,884 | Huang X, et al, Nat Genetics 2010 Nov... | 5,265 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | RiceDiversity 44K SNP assay, 34 trait... | 5,265 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | RiceDiversity 44K SNP assay, 34 trait... | 252 | Search for SNPs |