QTL Accession ID | CQF4 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFNICN |
Trait Name | leaf nitrogen content |
Published Symbol | |
Trait Synonym(s) | total leaf content |
Trait Category | Biochemical |
Chromosome | 2 |
Comments | Total leaf nitrogen content was determined by CN-Corder (Yanaco Co. Japan) by using the leaf samples oven-dried at 80C for 3 days. The analysis was done on contents derived from leaf tissue collected 5 days after heading. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. A probability level of 0.01 was used as the threshold for detecting significant differences at P < 0.005 in the mean values of the two genotypic classes, homozygous for Nipponbare and Kasalath alleles. The means of ten replications per line were used in the data analysis. Phenotypic effect contributed by Nipponbare allele. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. A probability level of 0.01 was used as the threshold for detecting significant differences in the mean values of the two genotypic classes, homozygous for Nipponbare and Kasalath alleles. Leaf nitrogen contents were positively correlated with the soluble protein content (r=0.456; P<0.01) and Rubisco content (r=0.367; P<0.05). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 435,819-3,480,270 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 2.5-15 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQF4 | 2 | 2.5 | 15 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000543) | Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0009025) | Ishimaru-K et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Ishimaru-K et al., 2001 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Ishimaru-K et al., 2001 (SM) |
(GRO:0007140) | Ishimaru-K et al., 2001 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 435,819 | 3,480,270 | ~160K SNPs x 20 accessions (McNally 2... | 1,601 | Search for SNPs |
chr2 | 435,819 | 3,480,270 | '1536 chip' - 1311 SNPs x 395 rice ac... | 15 | Search for SNPs |
chr2 | 435,819 | 3,480,270 | Huang X, et al, Nat Genetics 2010 Nov... | 7,660 | Search for SNPs |
chr2 | 435,819 | 3,480,270 | RiceDiversity 44K SNP assay, 34 trait... | 7,660 | Search for SNPs |
chr2 | 435,819 | 3,480,270 | RiceDiversity 44K SNP assay, 34 trait... | 345 | Search for SNPs |