QTL Accession ID | CQF15 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RUBISCOCN |
Trait Name | rubisco content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 12 |
Comments | For determining Rubisco content soluble proteins (2 µg) were subjected to SDS-PAGE using 12.5% (w/v) gels containing 0.1% (w/v) SDS, and the gels were stained with Coomassie brilliant blue. The intensity of the band corresponding to Rubisco was measured with an image analyzer (Umax Technologies, Calif.). The analysis was done on contents derived from leaf tissue collected 25 days after heading. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. A probability level of 0.01 was used as the threshold for detecting significant differences in the mean values of the two genotypic classes, homozygous for Nipponbare and Kasalath alleles. In the back crossed inbred lines (BILs) there was a high correlation among the soluble protein content and Rubisco content at 25 days (r=0.248; P<0.05) after heading. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 1,548,040-23,520,921 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 12 | 51.5-91.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQF15 | 12 | 51.5 | 91.4 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000319) | Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0009011) | Ishimaru-K et al., 2001 (SM) |
(PO:0000003) | Ishimaru-K et al., 2001 (SM) | |
Plant Growth and Development Stage | (PO:0009012) | Ishimaru-K et al., 2001 (SM) |
(PO:0007033) | Ishimaru-K et al., 2001 (SM) | |
Growth Stage | (GRO:0007001) | Ishimaru-K et al., 2001 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 1,548,040 | 23,520,921 | ~160K SNPs x 20 accessions (McNally 2... | 7,207 | Search for SNPs |
chr12 | 1,548,040 | 23,520,921 | '1536 chip' - 1311 SNPs x 395 rice ac... | 77 | Search for SNPs |
chr12 | 1,548,040 | 23,520,921 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
chr12 | 1,548,040 | 23,520,921 | Huang X, et al, Nat Genetics 2010 Nov... | 52,299 | Search for SNPs |
chr12 | 1,548,040 | 23,520,921 | RiceDiversity 44K SNP assay, 34 trait... | 52,299 | Search for SNPs |
chr12 | 1,548,040 | 23,520,921 | RiceDiversity 44K SNP assay, 34 trait... | 1,682 | Search for SNPs |