QTL Accession ID | CQE86 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RAAB |
Trait Name | ratooning ability |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 12 |
Comments | Ratooning ability was determined at 30 days after harvest. At the time of harvest, the stems/culms were cut to a 15-cm stubble height. The means of ten replications per line were used in the data analysis. Phenotypic effect contributed by Nipponbare allele. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 3,885,926-27,489,485 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 12 | 97.3-109.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQE86 | 12 | 97.3 | 109.5 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000096) | Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0005001) | Ishimaru-K et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007073) | Ishimaru-K et al., 2001 (SM) |
Growth Stage | (GRO:0007049) | Ishimaru-K et al., 2001 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 3,885,926 | 27,489,485 | ~160K SNPs x 20 accessions (McNally 2... | 8,285 | Search for SNPs |
chr12 | 3,885,926 | 27,489,485 | '1536 chip' - 1311 SNPs x 395 rice ac... | 88 | Search for SNPs |
chr12 | 3,885,926 | 27,489,485 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
chr12 | 3,885,926 | 27,489,485 | Huang X, et al, Nat Genetics 2010 Nov... | 58,108 | Search for SNPs |
chr12 | 3,885,926 | 27,489,485 | RiceDiversity 44K SNP assay, 34 trait... | 58,108 | Search for SNPs |
chr12 | 3,885,926 | 27,489,485 | RiceDiversity 44K SNP assay, 34 trait... | 1,860 | Search for SNPs |