QTL Accession ID | CQE79 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CBCN |
Trait Name | carbon content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 11 |
Comments | Carbon content trait assay is for carbon isotope analysis. Grains were oven-dried at 80C for 2 days, and [isotope 13C] values were determined with a mass spectrometer (Finnegan MAT, San Jose, Calif.). Assay is an indicator of intercellular carbon di-oxide concentration. The means of ten replications per line were used in the data analysis. Phenotypic effect contributed by Nipponbare allele. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 17,353,847-20,012,442 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 11 | 68.4-80.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQE79 | 11 | 68.4 | 80.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | 16-ICG | RFLP | Oryza sativa | qtl_marker |
To | C10775S | RFLP | Oryza sativa | qtl_marker |
To | C11521S | RFLP | Oryza sativa | qtl_marker |
To | C1172 | RFLP | Oryza sativa | qtl_marker |
To | C12709S | RFLP | Oryza sativa | qtl_marker |
To | C459 | RFLP | Oryza sativa | qtl_marker |
To | G257 | RFLP | Oryza sativa | qtl_marker |
To | E3558 | RFLP | Oryza sativa | qtl_marker |
To | E60570 | RFLP | Oryza sativa | qtl_marker |
To | E51178 | RFLP | Oryza sativa | qtl_marker |
To | CSU25 | RFLP | Zea mays subsp. mays | qtl_marker |
To | E11749 | RFLP | Oryza sativa | qtl_marker |
To | S16073 | RFLP | Oryza sativa | qtl_marker |
To | V98 | RFLP | Oryza sativa | qtl_marker |
To | E11382S | RFLP | Oryza sativa | qtl_marker |
To | S4002S | RFLP | Oryza sativa | qtl_marker |
To | CSU166 | RFLP | Zea mays subsp. mays | qtl_marker |
To | R3341 | RFLP | Oryza sativa | qtl_marker |
To | S11988 | RFLP | Oryza sativa | qtl_marker |
To | V212 | RFLP | Oryza sativa | qtl_marker |
To | PSR1871 | RFLP | Triticum aestivum | qtl_marker |
To | CSU64 | RFLP | Zea mays subsp. mays | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000466) | Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0009001) | Ishimaru-K et al., 2001 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038) | Ishimaru-K et al., 2001 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Ishimaru-K et al., 2001 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 17,353,847 | 20,012,442 | ~160K SNPs x 20 accessions (McNally 2... | 1,474 | Search for SNPs |
chr11 | 17,353,847 | 20,012,442 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr11 | 17,353,847 | 20,012,442 | Huang X, et al, Nat Genetics 2010 Nov... | 9,370 | Search for SNPs |
chr11 | 17,353,847 | 20,012,442 | RiceDiversity 44K SNP assay, 34 trait... | 9,370 | Search for SNPs |
chr11 | 17,353,847 | 20,012,442 | RiceDiversity 44K SNP assay, 34 trait... | 328 | Search for SNPs |