Oryza sativa QTL "CQE29" (space)

QTL Accession ID	CQE29
Species	Oryza sativa (Rice) [ GR_tax:013681 ]
Trait Symbol	SP
Trait Name	space
Published Symbol
Trait Synonym(s)	plant volume space occupied per plant
Trait Category	Anatomy
Chromosome	4
Comments	Space occupied by plant. Calculated as space=1/3 (width/2)2plant height. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 4

4,346,371-19,544,854 bp

View Comparative Map

Details

CMap Preview

Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

JRGP Nip/Kas F2 QTL 2000

BNL6.32

10.7-52.6 cM

View Comparative Map

Details

CMap Preview

QTL DB Map Position (1)

Name	Chromosome	Start	Stop
CQE29	4	10.7	52.6

Associated Markers (64)

Direction	Name	Type	Species	Assoc. Type
To	C10501S	RFLP	Oryza sativa	qtl_marker
To	C10543S	RFLP	Oryza sativa	qtl_marker
To	C12132S	RFLP	Oryza sativa	qtl_marker
To	C12216S	RFLP	Oryza sativa	qtl_marker
To	C1794	RFLP	Oryza sativa	qtl_marker
To	C392S	RFLP	Oryza sativa	qtl_marker
To	C459	RFLP	Oryza sativa	qtl_marker
To	C51175S	RFLP	Oryza sativa	qtl_marker
To	C53648S	RFLP	Oryza sativa	qtl_marker
To	C53760S	RFLP	Oryza sativa	qtl_marker
To	C708	RFLP	Oryza sativa	qtl_marker
To	C734	RFLP	Oryza sativa	qtl_marker
To	C820	RFLP	Oryza sativa	qtl_marker
To	C891	RFLP	Oryza sativa	qtl_marker
To	C933	RFLP	Oryza sativa	qtl_marker
To	C946	RFLP	Oryza sativa	qtl_marker
To	C954	RFLP	Oryza sativa	qtl_marker
To	C975	RFLP	Oryza sativa	qtl_marker
To	R-enzyme(RS)	RFLP	Oryza sativa	qtl_marker
To	S2713	RFLP	Oryza sativa	qtl_marker
To	G3006	RFLP	Oryza sativa	qtl_marker
To	E10326S	RFLP	Oryza sativa	qtl_marker
To	E3082	RFLP	Oryza sativa	qtl_marker
To	G5002	RFLP	Oryza sativa	qtl_marker
To	R2949	RFLP	Oryza sativa	qtl_marker
To	S2106	RFLP	Oryza sativa	qtl_marker
To	R288	RFLP	Oryza sativa	qtl_marker
To	V190	RFLP	Oryza sativa	qtl_marker
To	NH84	RFLP	Oryza sativa	qtl_marker
To	G124	RFLP	Oryza sativa	qtl_marker
To	Y5685R	RFLP	Oryza sativa	qtl_marker
To	E21001S	RFLP	Oryza sativa	qtl_marker
To	S11182	RFLP	Oryza sativa	qtl_marker
To	RZ602	RFLP	Oryza sativa	qtl_marker
To	pTtksuF15	RFLP	Aegilops tauschii	qtl_marker
To	Y6185L	RFLP	Oryza sativa	qtl_marker
To	E31045S	RFLP	Oryza sativa	qtl_marker
To	DHPS	RFLP	Zea mays subsp. mays	qtl_marker
To	S2242	RFLP	Oryza sativa	qtl_marker
To	E61762S	RFLP	Oryza sativa	qtl_marker
To	R10729S	RFLP	Oryza sativa	qtl_marker
To	E679S	RFLP	Oryza sativa	qtl_marker
To	E2466S	RFLP	Oryza sativa	qtl_marker
To	L363	RFLP	Oryza sativa	qtl_marker
To	R10945S	RFLP	Oryza sativa	qtl_marker
To	V85	RFLP	Oryza sativa	qtl_marker
To	RG908	RFLP	Oryza sativa	qtl_marker
To	E60232S	RFLP	Oryza sativa	qtl_marker
To	S1621	RFLP	Oryza sativa	qtl_marker
To	E61662S	RFLP	Oryza sativa	qtl_marker
To	S20660	RFLP	Oryza sativa	qtl_marker
To	E60368S	RFLP	Oryza sativa	qtl_marker
To	RZ656	RFLP	Oryza sativa	qtl_marker
To	S5217S	RFLP	Oryza sativa	qtl_marker
To	G3015	RFLP	Oryza sativa	qtl_marker
To	S20773S	RFLP	Oryza sativa	qtl_marker
To	E30341S	RFLP	Oryza sativa	qtl_marker
To	E61384S	RFLP	Oryza sativa	qtl_marker
To	S10983	RFLP	Oryza sativa	qtl_marker
To	E61747S	RFLP	Oryza sativa	qtl_marker
To	S10644	RFLP	Oryza sativa	qtl_marker
To	C61495	RFLP	Oryza sativa	qtl_marker
To	Y3635R	RFLP	Oryza sativa	qtl_marker
To	E11538S	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (10)

Term Type	Term	Evidence
Trait Ontology	(TO:0000559)	Ishimaru-K et al., 2001 (IAGP)
Plant Structure	(PO:0009047)	Ishimaru-K et al., 2001 (SM)
	(PO:0000003)	Ishimaru-K et al., 2001 (SM)
Plant Growth and Development Stage	(PO:0007038)	Ishimaru-K et al., 2001 (SM)
	(PO:0007130)	Gramene curators, 2007 (IC)
	(PO:0007134)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007139)	Ishimaru-K et al., 2001 (SM)
	(GRO:0007140)	Ishimaru-K et al., 2001 (SM)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Ishimaru-K et al., 2001 (SM)

Database Cross-References (1)

Gramene Literature	Ishimaru-K, Yano-M, Aoki-N, Ono-K, Hirose-T, Lin-S-Y, Monna-L, Sasaki-T, Ohsugi-R, "Toward the mapping of physiological and agronomic characters on a rice function map: QTL analysis and comparison between QTLs and expressed sequence tags", Theoretical and applied genetics, 2001, vol. 102- (6/7-)., pp. 793-800

SNPs (73,868)

Chr	Start	Stop	Exp	Num. SNP Positions
chr4	4,346,371	19,544,854	~160K SNPs x 20 accessions (McNally 2...	3,840	Search for SNPs
chr4	4,346,371	19,544,854	'1536 chip' - 1311 SNPs x 395 rice ac...	40	Search for SNPs
chr4	4,346,371	19,544,854	Huang X, et al, Nat Genetics 2010 Nov...	34,496	Search for SNPs
chr4	4,346,371	19,544,854	RiceDiversity 44K SNP assay, 34 trait...	34,496	Search for SNPs
chr4	4,346,371	19,544,854	RiceDiversity 44K SNP assay, 34 trait...	996	Search for SNPs

Browse by Trait Category: Abiotic stress \| Anatomy \| Biochemical \| Biotic stress \| Development \| Quality \| Sterility or fertility \| Vigor \| Yield
Find:	In:	Species: