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Oryza sativa QTL "CQE21" (chlorophyll content)
| QTL Accession ID | CQE21 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CHLCN |
| Trait Name | chlorophyll content |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Biochemical |
| Chromosome | 3 |
| Comments | Chlorophyll content for decreased levels was analyzed from the differences between leaves at 5 and 25 days after heading. Assay is an indicator of leaf senescence. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 25,091,144-30,114,777 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 3 | 99.6-135.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQE21 | 3 | 99.6 | 135.7 |
Associated Markers (53)
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000495) | Ishimaru-K et al., 2001 (IAGP) |
| Plant Structure | (PO:0020103) | Ishimaru-K et al., 2001 (SM) |
| (PO:0009025) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Ishimaru-K et al., 2001 (SM) |
| (PO:0007041) | Ishimaru-K et al., 2001 (SM) | |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Ishimaru-K et al., 2001 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Database Cross-References (1)
SNPs (30,526)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 25,091,144 | 30,114,777 | ~160K SNPs x 20 accessions (McNally 2... | 3,241 | Search for SNPs |
| chr3 | 25,091,144 | 30,114,777 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
| chr3 | 25,091,144 | 30,114,777 | Huang X, et al, Nat Genetics 2010 Nov... | 13,126 | Search for SNPs |
| chr3 | 25,091,144 | 30,114,777 | RiceDiversity 44K SNP assay, 34 trait... | 13,126 | Search for SNPs |
| chr3 | 25,091,144 | 30,114,777 | RiceDiversity 44K SNP assay, 34 trait... | 1,016 | Search for SNPs |
