Oryza sativa QTL "CQE16" (days to heading)

QTL Accession ID

CQE16

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

DTHD

Trait Name

days to heading

Published Symbol

Trait Synonym(s)

DH	HDD
heading date

Trait Category

Development

Chromosome

Comments

The trait was defined as total number of days for heading, starting from sowing. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 3

6,753,341-21,238,101 bp

View Comparative Map

Details

CMap Preview

Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

JRGP Nip/Kas F2 QTL 2000

BNL6.32

31.3-65.4 cM

View Comparative Map

Details

CMap Preview

QTL DB Map Position (1)

Name	Chromosome	Start	Stop
CQE16	3	31.3	65.4

Associated Markers (85)

Direction	Name	Type	Species	Assoc. Type
To	ABG22	RFLP	Hordeum vulgare	qtl_marker
To	B212	RFLP	Hordeum vulgare	qtl_marker
To	C1135	RFLP	Oryza sativa	qtl_marker
To	C1186	RFLP	Oryza sativa	qtl_marker
To	C12534S	RFLP	Oryza sativa	qtl_marker
To	C12845S	RFLP	Oryza sativa	qtl_marker
To	C1452	RFLP	Oryza sativa	qtl_marker
To	C1488	RFLP	Oryza sativa	qtl_marker
To	C161	RFLP	Oryza sativa	qtl_marker
To	C169	RFLP	Oryza sativa	qtl_marker
To	C198	RFLP	Oryza sativa	qtl_marker
To	C2045	RFLP	Oryza sativa	qtl_marker
To	C2184	RFLP	Oryza sativa	qtl_marker
To	C245	RFLP	Oryza sativa	qtl_marker
To	C269	RFLP	Oryza sativa	qtl_marker
To	C326	RFLP	Oryza sativa	qtl_marker
To	C361	RFLP	Oryza sativa	qtl_marker
To	C51380S	RFLP	Oryza sativa	qtl_marker
To	C563	RFLP	Oryza sativa	qtl_marker
To	C582	RFLP	Oryza sativa	qtl_marker
To	C603	RFLP	Oryza sativa	qtl_marker
To	C606	RFLP	Oryza sativa	qtl_marker
To	C60980S	RFLP	Oryza sativa	qtl_marker
To	C61244S	RFLP	Oryza sativa	qtl_marker
To	C614	RFLP	Oryza sativa	qtl_marker
To	C63	RFLP	Oryza sativa	qtl_marker
To	C68	RFLP	Oryza sativa	qtl_marker
To	C706	RFLP	Oryza sativa	qtl_marker
To	C730	RFLP	Oryza sativa	qtl_marker
To	C875	RFLP	Oryza sativa	qtl_marker
To	S10968	RFLP	Oryza sativa	qtl_marker
To	G55	RFLP	Oryza sativa	qtl_marker
To	R2584	RFLP	Oryza sativa	qtl_marker
To	R2778	RFLP	Oryza sativa	qtl_marker
To	R2015	RFLP	Oryza sativa	qtl_marker
To	S1845	RFLP	Oryza sativa	qtl_marker
To	S2680	RFLP	Oryza sativa	qtl_marker
To	R3130	RFLP	Oryza sativa	qtl_marker
To	R944	RFLP	Oryza sativa	qtl_marker
To	R2185	RFLP	Oryza sativa	qtl_marker
To	E60109S	RFLP	Oryza sativa	qtl_marker
To	R2293	RFLP	Oryza sativa	qtl_marker
To	S10251	RFLP	Oryza sativa	qtl_marker
To	R1868	RFLP	Oryza sativa	qtl_marker
To	V183	RFLP	Oryza sativa	qtl_marker
To	L761	RFLP	Oryza sativa	qtl_marker
To	R867	RFLP	Oryza sativa	qtl_marker
To	PSR104	RFLP	Triticum aestivum	qtl_marker
To	S2072	RFLP	Oryza sativa	qtl_marker
To	S13802	RFLP	Oryza sativa	qtl_marker
To	E1229S	RFLP	Oryza sativa	qtl_marker
To	S1524	RFLP	Oryza sativa	qtl_marker
To	S1650	RFLP	Oryza sativa	qtl_marker
To	R134	RFLP	Oryza sativa	qtl_marker
To	R3031S	RFLP	Oryza sativa	qtl_marker
To	R2849	RFLP	Oryza sativa	qtl_marker
To	R1690	RFLP	Oryza sativa	qtl_marker
To	S804	RFLP	Oryza sativa	qtl_marker
To	S941	RFLP	Oryza sativa	qtl_marker
To	R216	RFLP	Oryza sativa	qtl_marker
To	R1158	RFLP	Oryza sativa	qtl_marker
To	R411	RFLP	Oryza sativa	qtl_marker
To	G62	RFLP	Oryza sativa	qtl_marker
To	S1828	RFLP	Oryza sativa	qtl_marker
To	V161	RFLP	Oryza sativa	qtl_marker
To	R143	RFLP	Oryza sativa	qtl_marker
To	S14073	RFLP	Oryza sativa	qtl_marker
To	R1638	RFLP	Oryza sativa	qtl_marker
To	R1862	RFLP	Oryza sativa	qtl_marker
To	R3156	RFLP	Oryza sativa	qtl_marker
To	R758	RFLP	Oryza sativa	qtl_marker
To	R3126	RFLP	Oryza sativa	qtl_marker
To	E3279	RFLP	Oryza sativa	qtl_marker
To	CSU36	RFLP	Zea mays subsp. mays	qtl_marker
To	S11433	RFLP	Oryza sativa	qtl_marker
To	R2906S	RFLP	Oryza sativa	qtl_marker
To	E30305S	RFLP	Oryza sativa	qtl_marker
To	C60910	RFLP	Oryza sativa	qtl_marker
To	R2170	RFLP	Oryza sativa	qtl_marker
To	R2387	RFLP	Oryza sativa	qtl_marker
To	R1420	RFLP	Oryza sativa	qtl_marker
To	R44	RFLP	Oryza sativa	qtl_marker
To	R2877S	RFLP	Oryza sativa	qtl_marker
To	R549	RFLP	Oryza sativa	qtl_marker
To	E612	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (6)

Term Type	Term	Evidence
Trait Ontology	(TO:0000137)	Ishimaru-K et al., 2001 (IAGP)
Plant Structure	(PO:0009049)	Ishimaru-K et al., 2001 (SM)
Plant Growth and Development Stage	(PO:0007130)	Ishimaru-K et al., 2001 (SM)
Growth Stage	(GRO:0007044)	Ishimaru-K et al., 2001 (SM)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Ishimaru-K et al., 2001 (SM)

Database Cross-References (1)

Gramene Literature	Ishimaru-K, Yano-M, Aoki-N, Ono-K, Hirose-T, Lin-S-Y, Monna-L, Sasaki-T, Ohsugi-R, "Toward the mapping of physiological and agronomic characters on a rice function map: QTL analysis and comparison between QTLs and expressed sequence tags", Theoretical and applied genetics, 2001, vol. 102- (6/7-)., pp. 793-800

SNPs (68,664)

Chr	Start	Stop	Exp	Num. SNP Positions
chr3	6,753,341	21,238,101	~160K SNPs x 20 accessions (McNally 2...	6,082	Search for SNPs
chr3	6,753,341	21,238,101	'1536 chip' - 1311 SNPs x 395 rice ac...	46	Search for SNPs
chr3	6,753,341	21,238,101	Huang X, et al, Nat Genetics 2010 Nov...	30,525	Search for SNPs
chr3	6,753,341	21,238,101	RiceDiversity 44K SNP assay, 34 trait...	30,525	Search for SNPs
chr3	6,753,341	21,238,101	RiceDiversity 44K SNP assay, 34 trait...	1,486	Search for SNPs

Browse by Trait Category: Abiotic stress \| Anatomy \| Biochemical \| Biotic stress \| Development \| Quality \| Sterility or fertility \| Vigor \| Yield
Find:	In:	Species: