QTL Accession ID | CQC4 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | GRNB | ||||||
Trait Name | grain number | ||||||
Published Symbol | qGN-4 | ||||||
Trait Synonym(s) |
|
||||||
Trait Category | Yield | ||||||
Chromosome | 4 | ||||||
Comments | The trait grain number, was determined based on the average values of number of grains per panicle, per 10 individual plants from each line. The trait is also rebutted the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked t of committing a type-I error. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 13,634,515-22,355,854 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ8/JX17 RI QTL 2001 | BNL6.32 | 4 | 43.3-64.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQC4 | 4 | 43.3 | 64.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C513 | RFLP | Oryza sativa | qtl_marker |
To | C975 | RFLP | Oryza sativa | qtl_marker |
To | G271 | RFLP | Oryza sativa | qtl_marker |
To | RG908 | RFLP | Oryza sativa | qtl_marker |
To | Y34L | RFLP | Oryza sativa | qtl_marker |
To | G379 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000445) | He-P et al., 2001 (IAGP) Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | He-P et al., 2001 (SM) Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 13,634,515 | 22,355,854 | ~160K SNPs x 20 accessions (McNally 2... | 3,324 | Search for SNPs |
chr4 | 13,634,515 | 22,355,854 | '1536 chip' - 1311 SNPs x 395 rice ac... | 33 | Search for SNPs |
chr4 | 13,634,515 | 22,355,854 | Huang X, et al, Nat Genetics 2010 Nov... | 24,477 | Search for SNPs |
chr4 | 13,634,515 | 22,355,854 | RiceDiversity 44K SNP assay, 34 trait... | 24,477 | Search for SNPs |
chr4 | 13,634,515 | 22,355,854 | RiceDiversity 44K SNP assay, 34 trait... | 718 | Search for SNPs |