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Oryza sativa QTL "CQB28" (1000-grain weight)
| QTL Accession ID | CQB28 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | TGRWT |
| Trait Name | 1000-grain weight |
| Published Symbol | gw-8 |
| Trait Synonym(s) | thousand grain weight |
| Trait Category | Yield |
| Chromosome | 8 |
| Comments | The trait grain weight, was determined based on the average values of 10 individual plants from each line. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 3,542,893-5,423,539 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 8 | 45.4-78.3 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQB28 | 8 | 45.4 | 78.3 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | BP127 | RFLP | Oryza sativa | qtl_marker |
| To | RG885 | RFLP | Oryza sativa | qtl_marker |
| To | RZ562 | RFLP | Oryza sativa | qtl_marker |
| To | RM44 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ617 | RFLP | Oryza sativa | qtl_marker |
| To | G278 | RFLP | Oryza sativa | qtl_marker |
| To | RG1034 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000382) | Lu-C-F et al., 1997 (IAGP) Lu-C et al., 1996 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lu-C-F et al., 1997 (SM) Lu-C et al., 1996 (SM) |
Database Cross-References (2)
SNPs (7,384)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 3,542,893 | 5,423,539 | ~160K SNPs x 20 accessions (McNally 2... | 622 | Search for SNPs |
| chr8 | 3,542,893 | 5,423,539 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr8 | 3,542,893 | 5,423,539 | Huang X, et al, Nat Genetics 2010 Nov... | 3,288 | Search for SNPs |
| chr8 | 3,542,893 | 5,423,539 | RiceDiversity 44K SNP assay, 34 trait... | 3,288 | Search for SNPs |
| chr8 | 3,542,893 | 5,423,539 | RiceDiversity 44K SNP assay, 34 trait... | 177 | Search for SNPs |
